Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2798

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2797 and Shewana3_2798 are separated by 170 nucleotidesShewana3_2798 and Shewana3_2799 are separated by 50 nucleotides Shewana3_2797: Shewana3_2797 - potassium efflux system protein (RefSeq), at 3,339,625 to 3,341,571 _2797 Shewana3_2798: Shewana3_2798 - diguanylate cyclase (RefSeq), at 3,341,742 to 3,342,632 _2798 Shewana3_2799: Shewana3_2799 - tRNA(Ile)-lysidine synthetase (RefSeq), at 3,342,683 to 3,344,080 _2799 Position (kb) 3341 3342 3343Strain fitness (log2 ratio) -1 0 1at 3341.164 kb on - strand, within Shewana3_2797at 3341.254 kb on + strand, within Shewana3_2797at 3341.289 kb on + strand, within Shewana3_2797at 3341.374 kb on + strand, within Shewana3_2797at 3341.429 kb on - strandat 3341.530 kb on + strandat 3341.623 kb on + strandat 3341.745 kb on + strandat 3341.885 kb on - strand, within Shewana3_2798at 3341.918 kb on + strand, within Shewana3_2798at 3342.055 kb on - strand, within Shewana3_2798at 3342.055 kb on - strand, within Shewana3_2798at 3342.371 kb on - strand, within Shewana3_2798

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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3,341,164 - Shewana3_2797 0.79 +0.4
3,341,254 + Shewana3_2797 0.84 +0.2
3,341,289 + Shewana3_2797 0.85 +0.8
3,341,374 + Shewana3_2797 0.90 -1.1
3,341,429 - +0.4
3,341,530 + +0.2
3,341,623 + +1.5
3,341,745 + +0.4
3,341,885 - Shewana3_2798 0.16 +1.0
3,341,918 + Shewana3_2798 0.20 +0.6
3,342,055 - Shewana3_2798 0.35 +1.1
3,342,055 - Shewana3_2798 0.35 -0.7
3,342,371 - Shewana3_2798 0.71 +0.8

Or see this region's nucleotide sequence