Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2584

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlpxK and Shewana3_2584 are separated by 0 nucleotidesShewana3_2584 and Shewana3_2585 are separated by 32 nucleotides Shewana3_2582: Shewana3_2582 - hypothetical protein (RefSeq), at 3,086,265 to 3,086,444 _2582 Shewana3_2583: lpxK - tetraacyldisaccharide 4'-kinase (RefSeq), at 3,086,434 to 3,087,441 lpxK Shewana3_2584: Shewana3_2584 - lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq), at 3,087,442 to 3,089,244 _2584 Shewana3_2585: Shewana3_2585 - DNA internalization-related competence protein ComEC/Rec2 (RefSeq), at 3,089,277 to 3,091,598 _2585 Position (kb) 3087 3088 3089 3090Strain fitness (log2 ratio) -1 0 1at 3089.463 kb on - strandat 3089.467 kb on + strandat 3089.475 kb on - strandat 3089.901 kb on + strand, within Shewana3_2585at 3089.995 kb on + strand, within Shewana3_2585at 3090.003 kb on - strand, within Shewana3_2585at 3090.120 kb on + strand, within Shewana3_2585at 3090.128 kb on - strand, within Shewana3_2585at 3090.191 kb on - strand, within Shewana3_2585at 3090.225 kb on - strand, within Shewana3_2585

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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3,089,463 - -1.3
3,089,467 + -0.2
3,089,475 - -1.3
3,089,901 + Shewana3_2585 0.27 +0.2
3,089,995 + Shewana3_2585 0.31 +0.7
3,090,003 - Shewana3_2585 0.31 +0.0
3,090,120 + Shewana3_2585 0.36 +1.2
3,090,128 - Shewana3_2585 0.37 +0.4
3,090,191 - Shewana3_2585 0.39 -0.2
3,090,225 - Shewana3_2585 0.41 +0.1

Or see this region's nucleotide sequence