Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2545 and purN overlap by 1 nucleotides purN and Shewana3_2547 are separated by 138 nucleotides Shewana3_2547 and Shewana3_2548 are separated by 197 nucleotides
Shewana3_2545: Shewana3_2545 - phosphoribosylaminoimidazole synthetase (RefSeq), at 3,042,708 to 3,043,745
_2545
Shewana3_2546: purN - phosphoribosylglycinamide formyltransferase (RefSeq), at 3,043,745 to 3,044,389
purN
Shewana3_2547: Shewana3_2547 - UMP phosphatase (RefSeq), at 3,044,528 to 3,045,274
_2547
Shewana3_2548: Shewana3_2548 - peptidase M28 (RefSeq), at 3,045,472 to 3,047,145
_2548
Position (kb)
3044
3045
3046 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3043.696 kb on + strand at 3043.725 kb on + strand at 3043.756 kb on - strand at 3043.758 kb on + strand at 3043.826 kb on + strand, within purN at 3044.089 kb on + strand, within purN at 3044.172 kb on + strand, within purN at 3044.278 kb on + strand, within purN at 3044.307 kb on + strand, within purN at 3044.315 kb on - strand, within purN at 3044.675 kb on - strand, within Shewana3_2547 at 3044.816 kb on - strand, within Shewana3_2547 at 3045.074 kb on + strand, within Shewana3_2547 at 3045.172 kb on - strand, within Shewana3_2547 at 3045.300 kb on + strand at 3045.465 kb on - strand at 3045.643 kb on - strand, within Shewana3_2548 at 3046.148 kb on - strand, within Shewana3_2548
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 3,043,696 + -3.4 3,043,725 + -3.4 3,043,756 - -3.6 3,043,758 + -4.0 3,043,826 + purN Shewana3_2546 0.13 -3.4 3,044,089 + purN Shewana3_2546 0.53 -3.0 3,044,172 + purN Shewana3_2546 0.66 -3.4 3,044,278 + purN Shewana3_2546 0.83 -2.3 3,044,307 + purN Shewana3_2546 0.87 -2.2 3,044,315 - purN Shewana3_2546 0.88 -2.3 3,044,675 - Shewana3_2547 0.20 -1.0 3,044,816 - Shewana3_2547 0.39 +1.0 3,045,074 + Shewana3_2547 0.73 -1.5 3,045,172 - Shewana3_2547 0.86 +0.3 3,045,300 + -0.4 3,045,465 - -0.7 3,045,643 - Shewana3_2548 0.10 -0.0 3,046,148 - Shewana3_2548 0.40 -1.1
Or see this region's nucleotide sequence