Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2276

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2274 and Shewana3_2275 are separated by 155 nucleotidesShewana3_2275 and hscA are separated by 8 nucleotideshscA and hscB are separated by 67 nucleotideshscB and Shewana3_2278 are separated by 15 nucleotidesShewana3_2278 and Shewana3_2279 are separated by 14 nucleotides Shewana3_2274: Shewana3_2274 - SSU ribosomal protein S6P modification protein (RefSeq), at 2,737,428 to 2,738,327 _2274 Shewana3_2275: Shewana3_2275 - ferredoxin, 2Fe-2S type, ISC system (RefSeq), at 2,738,483 to 2,738,818 _2275 Shewana3_2276: hscA - chaperone protein HscA (RefSeq), at 2,738,827 to 2,740,689 hscA Shewana3_2277: hscB - co-chaperone HscB (RefSeq), at 2,740,757 to 2,741,281 hscB Shewana3_2278: Shewana3_2278 - iron-sulfur cluster assembly protein IscA (RefSeq), at 2,741,297 to 2,741,620 _2278 Shewana3_2279: Shewana3_2279 - scaffold protein (RefSeq), at 2,741,635 to 2,742,018 _2279 Position (kb) 2738 2739 2740 2741Strain fitness (log2 ratio) -1 0 1at 2738.099 kb on + strand, within Shewana3_2274at 2738.099 kb on + strand, within Shewana3_2274at 2738.294 kb on + strandat 2738.302 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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2,738,099 + Shewana3_2274 0.75 +0.2
2,738,099 + Shewana3_2274 0.75 -0.4
2,738,294 + -0.2
2,738,302 - +0.4

Or see this region's nucleotide sequence