Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1745

Experiment: L-Malic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1744 and Shewana3_1745 are separated by 126 nucleotidesShewana3_1745 and Shewana3_1746 are separated by 29 nucleotidesShewana3_1746 and mnmA are separated by 3 nucleotides Shewana3_1744: Shewana3_1744 - cupin 4 family protein (RefSeq), at 2,057,531 to 2,058,670 _1744 Shewana3_1745: Shewana3_1745 - adenylosuccinate lyase (RefSeq), at 2,058,797 to 2,060,167 _1745 Shewana3_1746: Shewana3_1746 - hypothetical protein (RefSeq), at 2,060,197 to 2,060,814 _1746 Shewana3_1747: mnmA - tRNA-specific 2-thiouridylase MnmA (RefSeq), at 2,060,818 to 2,061,936 mnmA Position (kb) 2058 2059 2060 2061Strain fitness (log2 ratio) -2 -1 0 1 2at 2057.822 kb on + strand, within Shewana3_1744at 2057.934 kb on - strand, within Shewana3_1744at 2057.987 kb on + strand, within Shewana3_1744at 2057.996 kb on - strand, within Shewana3_1744at 2058.094 kb on + strand, within Shewana3_1744at 2058.104 kb on - strand, within Shewana3_1744at 2058.246 kb on - strand, within Shewana3_1744at 2058.485 kb on - strand, within Shewana3_1744at 2058.559 kb on + strandat 2060.625 kb on - strand, within Shewana3_1746at 2060.642 kb on - strand, within Shewana3_1746at 2060.647 kb on - strand, within Shewana3_1746

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
remove
2,057,822 + Shewana3_1744 0.26 +0.8
2,057,934 - Shewana3_1744 0.35 +0.0
2,057,987 + Shewana3_1744 0.40 +2.6
2,057,996 - Shewana3_1744 0.41 +2.5
2,058,094 + Shewana3_1744 0.49 +0.5
2,058,104 - Shewana3_1744 0.50 +0.1
2,058,246 - Shewana3_1744 0.63 +0.0
2,058,485 - Shewana3_1744 0.84 -0.4
2,058,559 + -1.0
2,060,625 - Shewana3_1746 0.69 -0.9
2,060,642 - Shewana3_1746 0.72 -2.0
2,060,647 - Shewana3_1746 0.73 -0.7

Or see this region's nucleotide sequence