Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0048

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_R0041 and Shewana3_R0042 are separated by 18 nucleotidesShewana3_R0042 and Shewana3_R0043 are separated by 28 nucleotidesShewana3_R0043 and Shewana3_R0044 are separated by 82 nucleotidesShewana3_R0044 and Shewana3_R0045 are separated by 43 nucleotidesShewana3_R0045 and Shewana3_R0046 are separated by 44 nucleotidesShewana3_R0046 and Shewana3_R0047 are separated by 36 nucleotidesShewana3_R0047 and Shewana3_R0048 are separated by 94 nucleotidesShewana3_R0048 and valS are separated by 406 nucleotides Shewana3_R0041: Shewana3_R0041 - tRNA-Ser (RefSeq), at 1,332,641 to 1,332,732 _R0041 Shewana3_R0042: Shewana3_R0042 - tRNA-Arg (RefSeq), at 1,332,751 to 1,332,827 _R0042 Shewana3_R0043: Shewana3_R0043 - tRNA-Arg (RefSeq), at 1,332,856 to 1,332,932 _R0043 Shewana3_R0044: Shewana3_R0044 - tRNA-Arg (RefSeq), at 1,333,015 to 1,333,091 _R0044 Shewana3_R0045: Shewana3_R0045 - tRNA-Arg (RefSeq), at 1,333,135 to 1,333,211 _R0045 Shewana3_R0046: Shewana3_R0046 - tRNA-Arg (RefSeq), at 1,333,256 to 1,333,332 _R0046 Shewana3_R0047: Shewana3_R0047 - tRNA-Ser (RefSeq), at 1,333,369 to 1,333,460 _R0047 Shewana3_R0048: Shewana3_R0048 - tRNA-Arg (RefSeq), at 1,333,555 to 1,333,631 _R0048 Shewana3_1131: valS - valyl-tRNA synthetase (RefSeq), at 1,334,038 to 1,336,914 valS Position (kb) 1333 1334Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1333.713 kb on + strandat 1333.853 kb on + strandat 1333.901 kb on + strandat 1333.957 kb on + strandat 1333.957 kb on + strandat 1334.036 kb on - strandat 1334.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,333,713 + -1.9
1,333,853 + -1.1
1,333,901 + +0.3
1,333,957 + -1.4
1,333,957 + -0.7
1,334,036 - +3.1
1,334,050 - +0.4

Or see this region's nucleotide sequence