Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt modB and Shewana3_0743 overlap by 1 nucleotides Shewana3_0743 and Shewana3_0744 are separated by 202 nucleotides Shewana3_0744 and Shewana3_0745 are separated by 16 nucleotides
Shewana3_0742: modB - molybdate ABC transporter permease protein (RefSeq), at 861,758 to 862,495
modB
Shewana3_0743: Shewana3_0743 - molybdenum ABC transporter, periplasmic molybdate-binding protein (RefSeq), at 862,495 to 863,280
_0743
Shewana3_0744: Shewana3_0744 - ModE family transcriptional regulator (RefSeq), at 863,483 to 864,262
_0744
Shewana3_0745: Shewana3_0745 - putative iron-sulfur cluster binding protein (RefSeq), at 864,279 to 865,460
_0745
Position (kb) 863
864
865 Strain fitness (log2 ratio) -2
-1
0
1 at 862.500 kb on - strand at 862.554 kb on - strand at 862.734 kb on - strand, within Shewana3_0743 at 862.894 kb on + strand, within Shewana3_0743 at 862.919 kb on - strand, within Shewana3_0743 at 862.938 kb on + strand, within Shewana3_0743 at 863.007 kb on - strand, within Shewana3_0743 at 863.029 kb on + strand, within Shewana3_0743 at 863.037 kb on - strand, within Shewana3_0743 at 863.040 kb on - strand, within Shewana3_0743 at 863.230 kb on + strand at 863.231 kb on - strand at 863.467 kb on - strand at 863.737 kb on + strand, within Shewana3_0744 at 863.923 kb on - strand, within Shewana3_0744 at 863.924 kb on - strand, within Shewana3_0744 at 864.047 kb on + strand, within Shewana3_0744 at 864.110 kb on - strand, within Shewana3_0744 at 864.206 kb on - strand at 864.471 kb on + strand, within Shewana3_0745 at 864.477 kb on + strand, within Shewana3_0745 at 864.479 kb on - strand, within Shewana3_0745 at 864.786 kb on - strand, within Shewana3_0745 at 864.820 kb on - strand, within Shewana3_0745 at 864.951 kb on + strand, within Shewana3_0745 at 865.149 kb on + strand, within Shewana3_0745 at 865.157 kb on - strand, within Shewana3_0745 at 865.157 kb on - strand, within Shewana3_0745
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 862,500 - +0.5 862,554 - +0.2 862,734 - Shewana3_0743 0.30 +0.5 862,894 + Shewana3_0743 0.51 -2.0 862,919 - Shewana3_0743 0.54 +0.4 862,938 + Shewana3_0743 0.56 +0.8 863,007 - Shewana3_0743 0.65 -1.3 863,029 + Shewana3_0743 0.68 +0.6 863,037 - Shewana3_0743 0.69 +0.2 863,040 - Shewana3_0743 0.69 -1.8 863,230 + -1.4 863,231 - +0.5 863,467 - -0.9 863,737 + Shewana3_0744 0.33 -1.4 863,923 - Shewana3_0744 0.56 -1.5 863,924 - Shewana3_0744 0.57 -0.8 864,047 + Shewana3_0744 0.72 +0.2 864,110 - Shewana3_0744 0.80 +0.3 864,206 - -0.9 864,471 + Shewana3_0745 0.16 -0.1 864,477 + Shewana3_0745 0.17 +0.2 864,479 - Shewana3_0745 0.17 +0.0 864,786 - Shewana3_0745 0.43 -0.5 864,820 - Shewana3_0745 0.46 +0.7 864,951 + Shewana3_0745 0.57 -1.6 865,149 + Shewana3_0745 0.74 +0.2 865,157 - Shewana3_0745 0.74 +0.3 865,157 - Shewana3_0745 0.74 +0.2
Or see this region's nucleotide sequence