Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0620 and Shewana3_0621 are separated by 205 nucleotides Shewana3_0621 and Shewana3_0622 are separated by 171 nucleotides
Shewana3_0620: Shewana3_0620 - diguanylate cyclase/phosphodiesterase (RefSeq), at 724,932 to 727,118
_0620
Shewana3_0621: Shewana3_0621 - hypothetical protein (RefSeq), at 727,324 to 727,881
_0621
Shewana3_0622: Shewana3_0622 - ATP-dependent helicase HrpB (RefSeq), at 728,053 to 730,560
_0622
Position (kb) 727
728 Strain fitness (log2 ratio) -2
-1
0
1
2 at 726.468 kb on + strand, within Shewana3_0620 at 726.530 kb on - strand, within Shewana3_0620 at 726.547 kb on + strand, within Shewana3_0620 at 726.547 kb on + strand, within Shewana3_0620 at 726.672 kb on + strand, within Shewana3_0620 at 726.721 kb on - strand, within Shewana3_0620 at 726.929 kb on - strand at 726.967 kb on + strand at 727.071 kb on - strand at 727.087 kb on - strand at 727.088 kb on - strand at 727.088 kb on - strand at 727.095 kb on - strand at 727.410 kb on - strand, within Shewana3_0621 at 727.504 kb on - strand, within Shewana3_0621 at 727.627 kb on + strand, within Shewana3_0621 at 727.637 kb on - strand, within Shewana3_0621 at 727.659 kb on - strand, within Shewana3_0621 at 727.814 kb on - strand, within Shewana3_0621 at 727.864 kb on - strand at 727.999 kb on + strand at 727.999 kb on + strand at 728.007 kb on - strand at 728.166 kb on - strand at 728.171 kb on - strand at 728.300 kb on - strand at 728.327 kb on - strand, within Shewana3_0622 at 728.434 kb on - strand, within Shewana3_0622 at 728.437 kb on + strand, within Shewana3_0622 at 728.476 kb on + strand, within Shewana3_0622 at 728.577 kb on + strand, within Shewana3_0622 at 728.579 kb on - strand, within Shewana3_0622 at 728.634 kb on + strand, within Shewana3_0622 at 728.754 kb on + strand, within Shewana3_0622 at 728.756 kb on + strand, within Shewana3_0622 at 728.756 kb on + strand, within Shewana3_0622 at 728.824 kb on + strand, within Shewana3_0622 at 728.824 kb on + strand, within Shewana3_0622 at 728.829 kb on + strand, within Shewana3_0622 at 728.837 kb on - strand, within Shewana3_0622 at 728.837 kb on - strand, within Shewana3_0622
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 726,468 + Shewana3_0620 0.70 +0.6 726,530 - Shewana3_0620 0.73 +0.2 726,547 + Shewana3_0620 0.74 -1.9 726,547 + Shewana3_0620 0.74 -1.6 726,672 + Shewana3_0620 0.80 +0.6 726,721 - Shewana3_0620 0.82 -1.3 726,929 - -1.6 726,967 + -1.1 727,071 - +0.4 727,087 - -0.8 727,088 - -0.4 727,088 - -1.3 727,095 - +0.3 727,410 - Shewana3_0621 0.15 -0.1 727,504 - Shewana3_0621 0.32 -2.7 727,627 + Shewana3_0621 0.54 +0.0 727,637 - Shewana3_0621 0.56 -1.2 727,659 - Shewana3_0621 0.60 -1.5 727,814 - Shewana3_0621 0.88 +1.1 727,864 - -1.1 727,999 + -0.5 727,999 + +1.8 728,007 - -2.0 728,166 - -0.5 728,171 - +0.7 728,300 - -0.5 728,327 - Shewana3_0622 0.11 +0.6 728,434 - Shewana3_0622 0.15 +0.1 728,437 + Shewana3_0622 0.15 -1.3 728,476 + Shewana3_0622 0.17 -0.0 728,577 + Shewana3_0622 0.21 +0.4 728,579 - Shewana3_0622 0.21 +0.5 728,634 + Shewana3_0622 0.23 -1.0 728,754 + Shewana3_0622 0.28 +0.8 728,756 + Shewana3_0622 0.28 +0.6 728,756 + Shewana3_0622 0.28 +0.5 728,824 + Shewana3_0622 0.31 +0.7 728,824 + Shewana3_0622 0.31 -1.4 728,829 + Shewana3_0622 0.31 -1.2 728,837 - Shewana3_0622 0.31 +0.5 728,837 - Shewana3_0622 0.31 +0.2
Or see this region's nucleotide sequence