Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0489 and Shewana3_0490 are separated by 58 nucleotides Shewana3_0490 and Shewana3_0491 are separated by 93 nucleotides Shewana3_0491 and Shewana3_0492 are separated by 64 nucleotides Shewana3_0492 and Shewana3_0493 are separated by 86 nucleotides
Shewana3_0489: Shewana3_0489 - cytochrome c, putative (RefSeq), at 571,892 to 574,021
_0489
Shewana3_0490: Shewana3_0490 - rhodanese domain-containing protein (RefSeq), at 574,080 to 574,523
_0490
Shewana3_0491: Shewana3_0491 - FKBP-type peptidyl-prolyl isomerase domain-containing protein (RefSeq), at 574,617 to 575,396
_0491
Shewana3_0492: Shewana3_0492 - formate-dependent nitrite reductase, NrfG protein (RefSeq), at 575,461 to 576,135
_0492
Shewana3_0493: Shewana3_0493 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 576,222 to 576,929
_0493
Position (kb) 574
575
576 Strain fitness (log2 ratio) -2
-1
0
1 at 573.671 kb on - strand, within Shewana3_0489 at 573.673 kb on + strand, within Shewana3_0489 at 573.681 kb on - strand, within Shewana3_0489 at 573.681 kb on - strand, within Shewana3_0489 at 573.734 kb on + strand, within Shewana3_0489 at 573.742 kb on - strand, within Shewana3_0489 at 573.824 kb on - strand at 573.953 kb on + strand at 573.953 kb on + strand at 573.953 kb on + strand at 573.953 kb on + strand at 573.961 kb on - strand at 573.961 kb on - strand at 573.961 kb on - strand at 574.031 kb on + strand at 574.039 kb on - strand at 574.066 kb on - strand at 574.176 kb on + strand, within Shewana3_0490 at 574.320 kb on + strand, within Shewana3_0490 at 574.455 kb on + strand, within Shewana3_0490 at 574.555 kb on - strand at 574.670 kb on - strand at 574.723 kb on - strand, within Shewana3_0491 at 574.795 kb on + strand, within Shewana3_0491 at 574.887 kb on + strand, within Shewana3_0491 at 574.895 kb on - strand, within Shewana3_0491 at 574.897 kb on + strand, within Shewana3_0491 at 574.897 kb on + strand, within Shewana3_0491 at 574.897 kb on + strand, within Shewana3_0491 at 575.049 kb on + strand, within Shewana3_0491 at 575.160 kb on - strand, within Shewana3_0491 at 575.175 kb on + strand, within Shewana3_0491 at 575.180 kb on + strand, within Shewana3_0491 at 575.209 kb on + strand, within Shewana3_0491 at 575.265 kb on + strand, within Shewana3_0491 at 575.397 kb on + strand at 575.397 kb on + strand at 575.409 kb on + strand at 575.441 kb on + strand at 575.449 kb on - strand at 575.486 kb on - strand at 575.541 kb on - strand, within Shewana3_0492 at 575.584 kb on - strand, within Shewana3_0492 at 575.590 kb on + strand, within Shewana3_0492 at 575.592 kb on + strand, within Shewana3_0492 at 575.825 kb on - strand, within Shewana3_0492 at 575.860 kb on - strand, within Shewana3_0492 at 575.860 kb on - strand, within Shewana3_0492 at 575.890 kb on - strand, within Shewana3_0492 at 576.084 kb on + strand at 576.092 kb on - strand at 576.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 573,671 - Shewana3_0489 0.84 -0.7 573,673 + Shewana3_0489 0.84 +0.2 573,681 - Shewana3_0489 0.84 +0.6 573,681 - Shewana3_0489 0.84 -0.8 573,734 + Shewana3_0489 0.86 +0.5 573,742 - Shewana3_0489 0.87 -1.1 573,824 - -1.5 573,953 + -1.2 573,953 + -1.6 573,953 + -2.2 573,953 + +0.5 573,961 - -1.3 573,961 - +0.2 573,961 - +0.3 574,031 + +0.4 574,039 - +1.1 574,066 - +0.3 574,176 + Shewana3_0490 0.22 -0.7 574,320 + Shewana3_0490 0.54 +0.2 574,455 + Shewana3_0490 0.84 +0.1 574,555 - +0.1 574,670 - +0.5 574,723 - Shewana3_0491 0.14 +0.4 574,795 + Shewana3_0491 0.23 -0.2 574,887 + Shewana3_0491 0.35 -0.5 574,895 - Shewana3_0491 0.36 -2.6 574,897 + Shewana3_0491 0.36 +1.1 574,897 + Shewana3_0491 0.36 +0.1 574,897 + Shewana3_0491 0.36 +0.4 575,049 + Shewana3_0491 0.55 +0.0 575,160 - Shewana3_0491 0.70 -0.6 575,175 + Shewana3_0491 0.72 +0.3 575,180 + Shewana3_0491 0.72 -1.3 575,209 + Shewana3_0491 0.76 -0.5 575,265 + Shewana3_0491 0.83 -1.2 575,397 + +1.2 575,397 + +0.3 575,409 + +0.1 575,441 + +0.3 575,449 - -1.1 575,486 - -1.0 575,541 - Shewana3_0492 0.12 +0.5 575,584 - Shewana3_0492 0.18 +1.2 575,590 + Shewana3_0492 0.19 -1.2 575,592 + Shewana3_0492 0.19 +1.0 575,825 - Shewana3_0492 0.54 +0.4 575,860 - Shewana3_0492 0.59 -0.6 575,860 - Shewana3_0492 0.59 +0.1 575,890 - Shewana3_0492 0.64 +0.5 576,084 + +0.0 576,092 - +1.0 576,274 - +0.8
Or see this region's nucleotide sequence