Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0488 and Shewana3_0489 are separated by 515 nucleotides Shewana3_0489 and Shewana3_0490 are separated by 58 nucleotides Shewana3_0490 and Shewana3_0491 are separated by 93 nucleotides
Shewana3_0488: Shewana3_0488 - cytochrome c-type biogenesis protein CcmF (RefSeq), at 569,337 to 571,376
_0488
Shewana3_0489: Shewana3_0489 - cytochrome c, putative (RefSeq), at 571,892 to 574,021
_0489
Shewana3_0490: Shewana3_0490 - rhodanese domain-containing protein (RefSeq), at 574,080 to 574,523
_0490
Shewana3_0491: Shewana3_0491 - FKBP-type peptidyl-prolyl isomerase domain-containing protein (RefSeq), at 574,617 to 575,396
_0491
Position (kb) 571
572
573
574
575 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 570.899 kb on - strand, within Shewana3_0488 at 570.970 kb on + strand, within Shewana3_0488 at 570.975 kb on + strand, within Shewana3_0488 at 571.002 kb on + strand, within Shewana3_0488 at 571.002 kb on + strand, within Shewana3_0488 at 571.005 kb on - strand, within Shewana3_0488 at 571.010 kb on - strand, within Shewana3_0488 at 571.010 kb on - strand, within Shewana3_0488 at 571.088 kb on + strand, within Shewana3_0488 at 571.094 kb on - strand, within Shewana3_0488 at 571.096 kb on - strand, within Shewana3_0488 at 571.098 kb on + strand, within Shewana3_0488 at 571.098 kb on + strand, within Shewana3_0488 at 571.098 kb on + strand, within Shewana3_0488 at 571.106 kb on - strand, within Shewana3_0488 at 571.106 kb on - strand, within Shewana3_0488 at 571.106 kb on - strand, within Shewana3_0488 at 571.141 kb on + strand, within Shewana3_0488 at 571.148 kb on - strand, within Shewana3_0488 at 571.149 kb on + strand, within Shewana3_0488 at 571.154 kb on + strand, within Shewana3_0488 at 571.162 kb on - strand, within Shewana3_0488 at 571.165 kb on + strand, within Shewana3_0488 at 571.165 kb on + strand, within Shewana3_0488 at 571.173 kb on - strand at 571.188 kb on + strand at 571.200 kb on + strand at 571.200 kb on + strand at 571.200 kb on + strand at 571.200 kb on + strand at 571.200 kb on + strand at 571.208 kb on - strand at 571.208 kb on - strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.221 kb on + strand at 571.288 kb on - strand at 571.288 kb on - strand at 571.306 kb on + strand at 571.311 kb on + strand at 571.311 kb on + strand at 571.311 kb on + strand at 571.311 kb on + strand at 571.311 kb on + strand at 571.317 kb on + strand at 571.317 kb on + strand at 571.317 kb on + strand at 571.318 kb on + strand at 571.319 kb on - strand at 571.319 kb on - strand at 571.319 kb on - strand at 571.319 kb on - strand at 571.319 kb on - strand at 571.322 kb on + strand at 571.323 kb on - strand at 571.325 kb on - strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.383 kb on + strand at 571.383 kb on + strand at 571.390 kb on + strand at 571.391 kb on - strand at 571.423 kb on - strand at 571.496 kb on + strand at 571.504 kb on - strand at 571.523 kb on + strand at 571.523 kb on + strand at 571.531 kb on - strand at 571.531 kb on - strand at 571.531 kb on - strand at 571.531 kb on - strand at 571.534 kb on + strand at 571.537 kb on + strand at 571.541 kb on + strand at 571.541 kb on + strand at 571.565 kb on + strand at 571.571 kb on - strand at 571.662 kb on + strand at 571.785 kb on + strand at 571.821 kb on + strand at 571.836 kb on + strand at 571.839 kb on - strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.842 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.849 kb on - strand at 571.849 kb on - strand at 571.849 kb on - strand at 571.849 kb on - strand at 571.849 kb on - strand at 571.851 kb on - strand at 571.851 kb on - strand at 571.851 kb on - strand at 571.877 kb on + strand at 571.877 kb on + strand at 571.885 kb on - strand at 571.885 kb on - strand at 571.909 kb on - strand at 571.925 kb on - strand at 571.941 kb on + strand at 571.946 kb on + strand at 571.946 kb on + strand at 571.953 kb on + strand at 571.953 kb on + strand at 571.953 kb on + strand at 571.953 kb on + strand at 571.953 kb on + strand at 571.954 kb on + strand at 571.954 kb on + strand at 571.954 kb on - strand at 571.954 kb on - strand at 571.954 kb on - strand at 571.959 kb on + strand at 571.962 kb on - strand at 571.962 kb on - strand at 571.962 kb on - strand at 571.962 kb on - strand at 571.962 kb on - strand at 571.964 kb on - strand at 571.976 kb on - strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.988 kb on + strand at 571.988 kb on + strand at 571.989 kb on + strand at 571.989 kb on + strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.996 kb on - strand at 571.997 kb on - strand at 571.997 kb on - strand at 572.006 kb on - strand at 572.011 kb on - strand at 572.031 kb on - strand at 572.091 kb on + strand at 572.100 kb on - strand at 572.108 kb on - strand, within Shewana3_0489 at 572.125 kb on - strand, within Shewana3_0489 at 572.188 kb on + strand, within Shewana3_0489 at 572.191 kb on - strand, within Shewana3_0489 at 572.201 kb on + strand, within Shewana3_0489 at 572.207 kb on + strand, within Shewana3_0489 at 572.215 kb on - strand, within Shewana3_0489 at 572.225 kb on - strand, within Shewana3_0489 at 572.240 kb on + strand, within Shewana3_0489 at 572.240 kb on + strand, within Shewana3_0489 at 572.246 kb on - strand, within Shewana3_0489 at 572.246 kb on - strand, within Shewana3_0489 at 572.247 kb on + strand, within Shewana3_0489 at 572.248 kb on - strand, within Shewana3_0489 at 572.255 kb on - strand, within Shewana3_0489 at 572.257 kb on + strand, within Shewana3_0489 at 572.257 kb on + strand, within Shewana3_0489 at 572.266 kb on + strand, within Shewana3_0489 at 572.266 kb on + strand, within Shewana3_0489 at 572.266 kb on + strand, within Shewana3_0489 at 572.266 kb on + strand, within Shewana3_0489 at 572.266 kb on - strand, within Shewana3_0489 at 572.268 kb on + strand, within Shewana3_0489 at 572.292 kb on + strand, within Shewana3_0489 at 572.295 kb on - strand, within Shewana3_0489 at 572.297 kb on + strand, within Shewana3_0489 at 572.300 kb on - strand, within Shewana3_0489 at 572.300 kb on - strand, within Shewana3_0489 at 572.302 kb on + strand, within Shewana3_0489 at 572.310 kb on + strand, within Shewana3_0489 at 572.310 kb on - strand, within Shewana3_0489 at 572.330 kb on + strand, within Shewana3_0489 at 572.331 kb on + strand, within Shewana3_0489 at 572.331 kb on + strand, within Shewana3_0489 at 572.331 kb on + strand, within Shewana3_0489 at 572.455 kb on - strand, within Shewana3_0489 at 572.494 kb on + strand, within Shewana3_0489 at 572.494 kb on + strand, within Shewana3_0489 at 572.645 kb on - strand, within Shewana3_0489 at 572.808 kb on + strand, within Shewana3_0489 at 572.871 kb on - strand, within Shewana3_0489 at 572.901 kb on + strand, within Shewana3_0489 at 572.950 kb on - strand, within Shewana3_0489 at 572.950 kb on - strand, within Shewana3_0489 at 572.961 kb on - strand, within Shewana3_0489 at 572.961 kb on - strand, within Shewana3_0489 at 572.994 kb on + strand, within Shewana3_0489 at 573.061 kb on - strand, within Shewana3_0489 at 573.089 kb on - strand, within Shewana3_0489 at 573.118 kb on + strand, within Shewana3_0489 at 573.118 kb on + strand, within Shewana3_0489 at 573.126 kb on - strand, within Shewana3_0489 at 573.126 kb on - strand, within Shewana3_0489 at 573.224 kb on + strand, within Shewana3_0489 at 573.232 kb on - strand, within Shewana3_0489 at 573.330 kb on - strand, within Shewana3_0489 at 573.363 kb on - strand, within Shewana3_0489 at 573.513 kb on + strand, within Shewana3_0489 at 573.574 kb on - strand, within Shewana3_0489 at 573.595 kb on + strand, within Shewana3_0489 at 573.604 kb on + strand, within Shewana3_0489 at 573.671 kb on - strand, within Shewana3_0489 at 573.673 kb on + strand, within Shewana3_0489 at 573.681 kb on - strand, within Shewana3_0489 at 573.681 kb on - strand, within Shewana3_0489 at 573.734 kb on + strand, within Shewana3_0489 at 573.742 kb on - strand, within Shewana3_0489 at 573.824 kb on - strand at 573.953 kb on + strand at 573.953 kb on + strand at 573.953 kb on + strand at 573.953 kb on + strand at 573.961 kb on - strand at 573.961 kb on - strand at 573.961 kb on - strand at 574.031 kb on + strand at 574.039 kb on - strand at 574.066 kb on - strand at 574.176 kb on + strand, within Shewana3_0490 at 574.320 kb on + strand, within Shewana3_0490 at 574.455 kb on + strand, within Shewana3_0490 at 574.555 kb on - strand at 574.670 kb on - strand at 574.723 kb on - strand, within Shewana3_0491 at 574.795 kb on + strand, within Shewana3_0491 at 574.887 kb on + strand, within Shewana3_0491 at 574.895 kb on - strand, within Shewana3_0491 at 574.897 kb on + strand, within Shewana3_0491 at 574.897 kb on + strand, within Shewana3_0491 at 574.897 kb on + strand, within Shewana3_0491
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 570,899 - Shewana3_0488 0.77 +0.5 570,970 + Shewana3_0488 0.80 -1.9 570,975 + Shewana3_0488 0.80 +0.5 571,002 + Shewana3_0488 0.82 +0.3 571,002 + Shewana3_0488 0.82 +0.8 571,005 - Shewana3_0488 0.82 +0.3 571,010 - Shewana3_0488 0.82 -1.2 571,010 - Shewana3_0488 0.82 -1.2 571,088 + Shewana3_0488 0.86 +0.8 571,094 - Shewana3_0488 0.86 +0.5 571,096 - Shewana3_0488 0.86 +0.1 571,098 + Shewana3_0488 0.86 +0.3 571,098 + Shewana3_0488 0.86 -1.2 571,098 + Shewana3_0488 0.86 +0.9 571,106 - Shewana3_0488 0.87 +0.0 571,106 - Shewana3_0488 0.87 +0.4 571,106 - Shewana3_0488 0.87 -1.8 571,141 + Shewana3_0488 0.88 -1.0 571,148 - Shewana3_0488 0.89 +0.3 571,149 + Shewana3_0488 0.89 -1.5 571,154 + Shewana3_0488 0.89 +0.4 571,162 - Shewana3_0488 0.89 -0.5 571,165 + Shewana3_0488 0.90 -2.8 571,165 + Shewana3_0488 0.90 +0.7 571,173 - +1.0 571,188 + -1.1 571,200 + +0.2 571,200 + +0.4 571,200 + -1.3 571,200 + -1.3 571,200 + -0.7 571,208 - +0.8 571,208 - -1.5 571,215 + +0.3 571,215 + +0.7 571,215 + +1.0 571,221 + +0.4 571,288 - +0.5 571,288 - +0.5 571,306 + +0.1 571,311 + +0.7 571,311 + +0.2 571,311 + +0.5 571,311 + +0.4 571,311 + +1.3 571,317 + +0.2 571,317 + +0.1 571,317 + +0.7 571,318 + +1.0 571,319 - +0.0 571,319 - -0.7 571,319 - +0.6 571,319 - +0.3 571,319 - -0.8 571,322 + -0.1 571,323 - +0.2 571,325 - +0.3 571,327 + +0.1 571,327 + -1.5 571,327 + +0.6 571,327 + +0.1 571,335 - +0.3 571,335 - +0.4 571,335 - +0.2 571,335 - +0.6 571,335 - +0.4 571,335 - -1.2 571,335 - +0.1 571,335 - +0.9 571,335 - -1.7 571,383 + +0.8 571,383 + -1.0 571,390 + +0.5 571,391 - +1.0 571,423 - -1.0 571,496 + +0.4 571,504 - +0.2 571,523 + +0.7 571,523 + -0.8 571,531 - +0.3 571,531 - -1.0 571,531 - +0.3 571,531 - -1.3 571,534 + +0.0 571,537 + +0.7 571,541 + +0.4 571,541 + +0.4 571,565 + -2.1 571,571 - +0.3 571,662 + +0.6 571,785 + +0.3 571,821 + -1.1 571,836 + +0.5 571,839 - +0.3 571,841 + +0.0 571,841 + -1.8 571,841 + +0.3 571,841 + +0.2 571,841 + +0.3 571,841 + +0.3 571,841 + +0.1 571,841 + +0.4 571,842 + +0.0 571,843 + -0.1 571,843 + +0.4 571,843 + -1.6 571,843 + -1.0 571,843 + +0.1 571,843 + +0.0 571,849 - +0.3 571,849 - +0.6 571,849 - +0.3 571,849 - -0.5 571,849 - +0.4 571,851 - -1.7 571,851 - +3.2 571,851 - -1.0 571,877 + -0.2 571,877 + +0.2 571,885 - +0.6 571,885 - -0.2 571,909 - +0.4 571,925 - -1.3 571,941 + +0.4 571,946 + +0.1 571,946 + -1.4 571,953 + +0.3 571,953 + -1.5 571,953 + -0.9 571,953 + +0.5 571,953 + -0.5 571,954 + -1.1 571,954 + -0.8 571,954 - +0.7 571,954 - +2.9 571,954 - +0.2 571,959 + -1.8 571,962 - -0.0 571,962 - +0.2 571,962 - -1.2 571,962 - -0.3 571,962 - +1.1 571,964 - +0.3 571,976 - +0.5 571,987 + +0.6 571,987 + -1.9 571,987 + +0.2 571,987 + +0.4 571,987 + -0.1 571,987 + +1.9 571,987 + -0.1 571,987 + -1.6 571,987 + +0.2 571,987 + +0.4 571,987 + -0.0 571,987 + +0.1 571,987 + +0.6 571,987 + +0.4 571,987 + +0.5 571,988 + +0.6 571,988 + -1.1 571,989 + -0.0 571,989 + +0.0 571,995 - +0.2 571,995 - +0.2 571,995 - +0.3 571,995 - +0.3 571,995 - +0.0 571,995 - +0.9 571,995 - +0.3 571,995 - +0.7 571,995 - -1.3 571,995 - -0.9 571,995 - +0.3 571,995 - +0.6 571,995 - +0.5 571,995 - -1.7 571,995 - +0.4 571,995 - +0.1 571,996 - +0.4 571,997 - +0.4 571,997 - +0.3 572,006 - +0.4 572,011 - +0.1 572,031 - -0.7 572,091 + +0.5 572,100 - +0.1 572,108 - Shewana3_0489 0.10 +0.3 572,125 - Shewana3_0489 0.11 +0.9 572,188 + Shewana3_0489 0.14 +0.2 572,191 - Shewana3_0489 0.14 +0.5 572,201 + Shewana3_0489 0.15 +0.0 572,207 + Shewana3_0489 0.15 -0.7 572,215 - Shewana3_0489 0.15 -1.5 572,225 - Shewana3_0489 0.16 +0.2 572,240 + Shewana3_0489 0.16 -0.1 572,240 + Shewana3_0489 0.16 -1.2 572,246 - Shewana3_0489 0.17 -0.3 572,246 - Shewana3_0489 0.17 +0.5 572,247 + Shewana3_0489 0.17 +0.0 572,248 - Shewana3_0489 0.17 -1.0 572,255 - Shewana3_0489 0.17 +0.2 572,257 + Shewana3_0489 0.17 -1.4 572,257 + Shewana3_0489 0.17 +0.7 572,266 + Shewana3_0489 0.18 +0.4 572,266 + Shewana3_0489 0.18 +1.6 572,266 + Shewana3_0489 0.18 +0.1 572,266 + Shewana3_0489 0.18 -1.2 572,266 - Shewana3_0489 0.18 +0.2 572,268 + Shewana3_0489 0.18 +0.4 572,292 + Shewana3_0489 0.19 +1.0 572,295 - Shewana3_0489 0.19 -3.9 572,297 + Shewana3_0489 0.19 +0.5 572,300 - Shewana3_0489 0.19 +0.4 572,300 - Shewana3_0489 0.19 -1.5 572,302 + Shewana3_0489 0.19 +0.3 572,310 + Shewana3_0489 0.20 +0.5 572,310 - Shewana3_0489 0.20 +0.7 572,330 + Shewana3_0489 0.21 -1.3 572,331 + Shewana3_0489 0.21 +1.3 572,331 + Shewana3_0489 0.21 +0.2 572,331 + Shewana3_0489 0.21 -1.7 572,455 - Shewana3_0489 0.26 +0.3 572,494 + Shewana3_0489 0.28 +0.0 572,494 + Shewana3_0489 0.28 +1.3 572,645 - Shewana3_0489 0.35 +0.3 572,808 + Shewana3_0489 0.43 -1.4 572,871 - Shewana3_0489 0.46 +0.4 572,901 + Shewana3_0489 0.47 -2.3 572,950 - Shewana3_0489 0.50 +0.8 572,950 - Shewana3_0489 0.50 -0.4 572,961 - Shewana3_0489 0.50 +0.3 572,961 - Shewana3_0489 0.50 +0.3 572,994 + Shewana3_0489 0.52 -0.2 573,061 - Shewana3_0489 0.55 +0.1 573,089 - Shewana3_0489 0.56 +0.1 573,118 + Shewana3_0489 0.58 +1.1 573,118 + Shewana3_0489 0.58 +0.2 573,126 - Shewana3_0489 0.58 -1.6 573,126 - Shewana3_0489 0.58 -0.6 573,224 + Shewana3_0489 0.63 -0.8 573,232 - Shewana3_0489 0.63 -1.1 573,330 - Shewana3_0489 0.68 -1.7 573,363 - Shewana3_0489 0.69 -1.0 573,513 + Shewana3_0489 0.76 +0.2 573,574 - Shewana3_0489 0.79 +0.4 573,595 + Shewana3_0489 0.80 -1.5 573,604 + Shewana3_0489 0.80 -0.8 573,671 - Shewana3_0489 0.84 -0.7 573,673 + Shewana3_0489 0.84 +0.2 573,681 - Shewana3_0489 0.84 +0.6 573,681 - Shewana3_0489 0.84 -0.8 573,734 + Shewana3_0489 0.86 +0.5 573,742 - Shewana3_0489 0.87 -1.1 573,824 - -1.5 573,953 + -1.2 573,953 + -1.6 573,953 + -2.2 573,953 + +0.5 573,961 - -1.3 573,961 - +0.2 573,961 - +0.3 574,031 + +0.4 574,039 - +1.1 574,066 - +0.3 574,176 + Shewana3_0490 0.22 -0.7 574,320 + Shewana3_0490 0.54 +0.2 574,455 + Shewana3_0490 0.84 +0.1 574,555 - +0.1 574,670 - +0.5 574,723 - Shewana3_0491 0.14 +0.4 574,795 + Shewana3_0491 0.23 -0.2 574,887 + Shewana3_0491 0.35 -0.5 574,895 - Shewana3_0491 0.36 -2.6 574,897 + Shewana3_0491 0.36 +1.1 574,897 + Shewana3_0491 0.36 +0.1 574,897 + Shewana3_0491 0.36 +0.4
Or see this region's nucleotide sequence