Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0472

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntubiA and Shewana3_0471 are separated by 86 nucleotidesShewana3_0471 and Shewana3_0472 are separated by 67 nucleotidesShewana3_0472 and Shewana3_0473 are separated by 103 nucleotidesShewana3_0473 and Shewana3_0474 are separated by 373 nucleotides Shewana3_0470: ubiA - 4-hydroxybenzoate octaprenyltransferase (RefSeq), at 547,026 to 547,886 ubiA Shewana3_0471: Shewana3_0471 - hypothetical protein (RefSeq), at 547,973 to 548,398 _0471 Shewana3_0472: Shewana3_0472 - IS4 family transposase (RefSeq), at 548,466 to 550,079 _0472 Shewana3_0473: Shewana3_0473 - hypothetical protein (RefSeq), at 550,183 to 550,599 _0473 Shewana3_0474: Shewana3_0474 - 2-nitropropane dioxygenase, NPD (RefSeq), at 550,973 to 552,034 _0474 Position (kb) 548 549 550 551Strain fitness (log2 ratio) -2 -1 0 1at 547.888 kb on - strandat 547.927 kb on + strandat 548.042 kb on - strand, within Shewana3_0471at 548.069 kb on + strand, within Shewana3_0471at 548.091 kb on - strand, within Shewana3_0471at 548.128 kb on + strand, within Shewana3_0471at 548.143 kb on - strand, within Shewana3_0471at 548.206 kb on + strand, within Shewana3_0471at 548.214 kb on + strand, within Shewana3_0471at 548.214 kb on - strand, within Shewana3_0471at 548.216 kb on + strand, within Shewana3_0471at 548.224 kb on - strand, within Shewana3_0471at 548.263 kb on - strand, within Shewana3_0471at 548.307 kb on + strand, within Shewana3_0471at 548.307 kb on + strand, within Shewana3_0471at 548.307 kb on + strand, within Shewana3_0471at 548.307 kb on + strand, within Shewana3_0471at 548.307 kb on + strand, within Shewana3_0471at 548.307 kb on + strand, within Shewana3_0471at 548.356 kb on + strandat 548.364 kb on - strandat 550.175 kb on + strandat 550.288 kb on + strand, within Shewana3_0473at 550.288 kb on + strand, within Shewana3_0473at 550.288 kb on + strand, within Shewana3_0473at 550.296 kb on - strand, within Shewana3_0473at 550.349 kb on - strand, within Shewana3_0473at 550.356 kb on - strand, within Shewana3_0473at 550.391 kb on + strand, within Shewana3_0473at 550.391 kb on + strand, within Shewana3_0473at 550.399 kb on - strand, within Shewana3_0473at 550.425 kb on - strand, within Shewana3_0473at 550.433 kb on - strand, within Shewana3_0473at 550.466 kb on - strand, within Shewana3_0473at 550.470 kb on + strand, within Shewana3_0473at 550.470 kb on + strand, within Shewana3_0473at 550.470 kb on + strand, within Shewana3_0473at 550.470 kb on + strand, within Shewana3_0473at 550.471 kb on + strand, within Shewana3_0473at 550.471 kb on + strand, within Shewana3_0473at 550.471 kb on + strand, within Shewana3_0473at 550.471 kb on + strand, within Shewana3_0473at 550.479 kb on - strand, within Shewana3_0473at 550.479 kb on - strand, within Shewana3_0473at 550.479 kb on - strand, within Shewana3_0473at 550.480 kb on + strand, within Shewana3_0473at 550.489 kb on - strand, within Shewana3_0473at 550.515 kb on + strand, within Shewana3_0473at 550.536 kb on + strand, within Shewana3_0473at 550.544 kb on - strand, within Shewana3_0473at 550.554 kb on - strand, within Shewana3_0473at 550.597 kb on + strandat 550.597 kb on + strandat 550.605 kb on - strandat 550.623 kb on + strandat 550.806 kb on - strandat 550.811 kb on + strandat 550.811 kb on + strandat 550.811 kb on + strandat 550.811 kb on + strandat 550.811 kb on + strandat 550.811 kb on + strandat 550.811 kb on + strandat 550.811 kb on + strandat 550.811 kb on + strandat 550.811 kb on + strandat 550.819 kb on - strandat 550.819 kb on - strandat 550.819 kb on - strandat 550.819 kb on - strandat 550.826 kb on + strandat 550.826 kb on + strandat 550.847 kb on - strandat 550.976 kb on - strandat 550.976 kb on - strandat 551.044 kb on + strandat 551.049 kb on + strandat 551.049 kb on + strandat 551.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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547,888 - +0.4
547,927 + -1.6
548,042 - Shewana3_0471 0.16 -1.5
548,069 + Shewana3_0471 0.23 +0.8
548,091 - Shewana3_0471 0.28 -0.7
548,128 + Shewana3_0471 0.36 -0.3
548,143 - Shewana3_0471 0.40 +0.4
548,206 + Shewana3_0471 0.55 +0.9
548,214 + Shewana3_0471 0.57 +0.6
548,214 - Shewana3_0471 0.57 +0.6
548,216 + Shewana3_0471 0.57 -1.3
548,224 - Shewana3_0471 0.59 -0.5
548,263 - Shewana3_0471 0.68 -0.0
548,307 + Shewana3_0471 0.78 -1.2
548,307 + Shewana3_0471 0.78 -0.1
548,307 + Shewana3_0471 0.78 -0.3
548,307 + Shewana3_0471 0.78 +0.2
548,307 + Shewana3_0471 0.78 +1.2
548,307 + Shewana3_0471 0.78 -0.5
548,356 + -0.9
548,364 - +0.4
550,175 + +0.7
550,288 + Shewana3_0473 0.25 +0.0
550,288 + Shewana3_0473 0.25 -0.1
550,288 + Shewana3_0473 0.25 +0.5
550,296 - Shewana3_0473 0.27 +0.7
550,349 - Shewana3_0473 0.40 -2.0
550,356 - Shewana3_0473 0.41 +0.4
550,391 + Shewana3_0473 0.50 +0.9
550,391 + Shewana3_0473 0.50 +0.5
550,399 - Shewana3_0473 0.52 +0.2
550,425 - Shewana3_0473 0.58 +0.5
550,433 - Shewana3_0473 0.60 -1.1
550,466 - Shewana3_0473 0.68 +0.3
550,470 + Shewana3_0473 0.69 -0.6
550,470 + Shewana3_0473 0.69 -0.3
550,470 + Shewana3_0473 0.69 +0.1
550,470 + Shewana3_0473 0.69 +0.0
550,471 + Shewana3_0473 0.69 +0.4
550,471 + Shewana3_0473 0.69 +0.1
550,471 + Shewana3_0473 0.69 -0.5
550,471 + Shewana3_0473 0.69 +0.1
550,479 - Shewana3_0473 0.71 +0.5
550,479 - Shewana3_0473 0.71 +0.5
550,479 - Shewana3_0473 0.71 +0.8
550,480 + Shewana3_0473 0.71 -0.1
550,489 - Shewana3_0473 0.73 -0.8
550,515 + Shewana3_0473 0.80 -0.7
550,536 + Shewana3_0473 0.85 +0.5
550,544 - Shewana3_0473 0.87 +0.5
550,554 - Shewana3_0473 0.89 +0.7
550,597 + +0.6
550,597 + -1.2
550,605 - +0.4
550,623 + +0.5
550,806 - +0.6
550,811 + -0.1
550,811 + +0.2
550,811 + -1.6
550,811 + -1.0
550,811 + +0.3
550,811 + +0.3
550,811 + -0.9
550,811 + +0.4
550,811 + +0.1
550,811 + -0.0
550,819 - +0.3
550,819 - +0.8
550,819 - -1.0
550,819 - +0.4
550,826 + -0.9
550,826 + -0.2
550,847 - -1.4
550,976 - +0.6
550,976 - -1.0
551,044 + +0.3
551,049 + +0.7
551,049 + +0.7
551,057 - -1.0

Or see this region's nucleotide sequence