Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0430 and Shewana3_0431 are separated by 211 nucleotides Shewana3_0431 and Shewana3_0432 are separated by 69 nucleotides
Shewana3_0430: Shewana3_0430 - patatin (RefSeq), at 496,353 to 498,572
_0430
Shewana3_0431: Shewana3_0431 - peptidase M13 (RefSeq), at 498,784 to 500,826
_0431
Shewana3_0432: Shewana3_0432 - 2-deoxyglucose-6-phosphatase (RefSeq), at 500,896 to 501,552
_0432
Position (kb) 498
499
500
501 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 497.834 kb on + strand, within Shewana3_0430 at 497.882 kb on + strand, within Shewana3_0430 at 497.890 kb on - strand, within Shewana3_0430 at 497.897 kb on - strand, within Shewana3_0430 at 497.903 kb on + strand, within Shewana3_0430 at 497.904 kb on + strand, within Shewana3_0430 at 498.001 kb on - strand, within Shewana3_0430 at 498.015 kb on + strand, within Shewana3_0430 at 498.015 kb on + strand, within Shewana3_0430 at 498.034 kb on + strand, within Shewana3_0430 at 498.134 kb on - strand, within Shewana3_0430 at 498.135 kb on + strand, within Shewana3_0430 at 498.135 kb on + strand, within Shewana3_0430 at 498.396 kb on + strand at 498.432 kb on + strand at 498.440 kb on - strand at 498.442 kb on + strand at 498.452 kb on + strand at 499.215 kb on - strand, within Shewana3_0431 at 499.308 kb on + strand, within Shewana3_0431 at 499.308 kb on + strand, within Shewana3_0431 at 499.310 kb on + strand, within Shewana3_0431 at 499.310 kb on + strand, within Shewana3_0431 at 499.318 kb on - strand, within Shewana3_0431 at 499.318 kb on - strand, within Shewana3_0431 at 499.324 kb on + strand, within Shewana3_0431 at 499.558 kb on - strand, within Shewana3_0431 at 499.604 kb on + strand, within Shewana3_0431 at 499.725 kb on - strand, within Shewana3_0431 at 499.739 kb on + strand, within Shewana3_0431 at 500.187 kb on + strand, within Shewana3_0431 at 500.508 kb on - strand, within Shewana3_0431 at 500.585 kb on - strand, within Shewana3_0431 at 500.705 kb on + strand at 500.722 kb on + strand at 500.751 kb on - strand at 500.899 kb on + strand at 500.899 kb on + strand at 501.064 kb on - strand, within Shewana3_0432 at 501.124 kb on + strand, within Shewana3_0432 at 501.149 kb on + strand, within Shewana3_0432 at 501.157 kb on - strand, within Shewana3_0432 at 501.337 kb on - strand, within Shewana3_0432 at 501.582 kb on - strand at 501.784 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 497,834 + Shewana3_0430 0.67 -0.5 497,882 + Shewana3_0430 0.69 -1.6 497,890 - Shewana3_0430 0.69 -0.6 497,897 - Shewana3_0430 0.70 -1.2 497,903 + Shewana3_0430 0.70 -0.0 497,904 + Shewana3_0430 0.70 +1.4 498,001 - Shewana3_0430 0.74 +0.2 498,015 + Shewana3_0430 0.75 +0.2 498,015 + Shewana3_0430 0.75 -0.5 498,034 + Shewana3_0430 0.76 +0.1 498,134 - Shewana3_0430 0.80 -1.0 498,135 + Shewana3_0430 0.80 -0.1 498,135 + Shewana3_0430 0.80 -0.2 498,396 + +0.3 498,432 + -1.0 498,440 - -1.5 498,442 + -0.5 498,452 + -0.3 499,215 - Shewana3_0431 0.21 +0.6 499,308 + Shewana3_0431 0.26 -0.7 499,308 + Shewana3_0431 0.26 -3.0 499,310 + Shewana3_0431 0.26 +1.0 499,310 + Shewana3_0431 0.26 -0.6 499,318 - Shewana3_0431 0.26 +0.1 499,318 - Shewana3_0431 0.26 -2.2 499,324 + Shewana3_0431 0.26 +0.4 499,558 - Shewana3_0431 0.38 +0.2 499,604 + Shewana3_0431 0.40 +0.1 499,725 - Shewana3_0431 0.46 +0.7 499,739 + Shewana3_0431 0.47 +0.5 500,187 + Shewana3_0431 0.69 -1.5 500,508 - Shewana3_0431 0.84 -1.4 500,585 - Shewana3_0431 0.88 -0.4 500,705 + +0.3 500,722 + -1.6 500,751 - +0.4 500,899 + -1.1 500,899 + -1.4 501,064 - Shewana3_0432 0.26 -0.0 501,124 + Shewana3_0432 0.35 -5.9 501,149 + Shewana3_0432 0.39 -0.7 501,157 - Shewana3_0432 0.40 +0.2 501,337 - Shewana3_0432 0.67 +0.3 501,582 - +0.2 501,784 + +0.5
Or see this region's nucleotide sequence