Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0320 and Shewana3_0321 are separated by 57 nucleotides Shewana3_0321 and Shewana3_0322 are separated by 349 nucleotides
Shewana3_0320: Shewana3_0320 - benzoate transporter (RefSeq), at 354,937 to 356,127
_0320
Shewana3_0321: Shewana3_0321 - GCN5-related N-acetyltransferase (RefSeq), at 356,185 to 356,640
_0321
Shewana3_0322: Shewana3_0322 - antibiotic acetyltransferase (RefSeq), at 356,990 to 357,637
_0322
Position (kb) 356
357 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 355.282 kb on - strand, within Shewana3_0320 at 355.357 kb on - strand, within Shewana3_0320 at 355.359 kb on + strand, within Shewana3_0320 at 355.401 kb on - strand, within Shewana3_0320 at 355.424 kb on + strand, within Shewana3_0320 at 355.428 kb on - strand, within Shewana3_0320 at 355.450 kb on - strand, within Shewana3_0320 at 355.536 kb on + strand, within Shewana3_0320 at 355.587 kb on + strand, within Shewana3_0320 at 355.602 kb on + strand, within Shewana3_0320 at 355.775 kb on - strand, within Shewana3_0320 at 355.843 kb on + strand, within Shewana3_0320 at 355.991 kb on - strand, within Shewana3_0320 at 356.150 kb on - strand at 356.173 kb on - strand at 356.183 kb on - strand at 356.183 kb on - strand at 356.282 kb on - strand, within Shewana3_0321 at 356.370 kb on + strand, within Shewana3_0321 at 356.482 kb on + strand, within Shewana3_0321 at 356.500 kb on - strand, within Shewana3_0321 at 356.503 kb on + strand, within Shewana3_0321 at 356.529 kb on + strand, within Shewana3_0321 at 356.613 kb on + strand at 356.737 kb on + strand at 356.765 kb on + strand at 356.831 kb on - strand at 356.877 kb on - strand at 356.903 kb on + strand at 356.924 kb on + strand at 357.123 kb on + strand, within Shewana3_0322 at 357.138 kb on - strand, within Shewana3_0322 at 357.192 kb on - strand, within Shewana3_0322 at 357.326 kb on + strand, within Shewana3_0322 at 357.331 kb on + strand, within Shewana3_0322 at 357.339 kb on + strand, within Shewana3_0322 at 357.339 kb on + strand, within Shewana3_0322 at 357.439 kb on + strand, within Shewana3_0322 at 357.447 kb on - strand, within Shewana3_0322 at 357.508 kb on + strand, within Shewana3_0322 at 357.565 kb on + strand, within Shewana3_0322 at 357.569 kb on - strand, within Shewana3_0322
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 355,282 - Shewana3_0320 0.29 +1.1 355,357 - Shewana3_0320 0.35 +0.1 355,359 + Shewana3_0320 0.35 -0.3 355,401 - Shewana3_0320 0.39 +0.4 355,424 + Shewana3_0320 0.41 +1.2 355,428 - Shewana3_0320 0.41 +0.4 355,450 - Shewana3_0320 0.43 +0.2 355,536 + Shewana3_0320 0.50 +0.3 355,587 + Shewana3_0320 0.55 +3.0 355,602 + Shewana3_0320 0.56 +0.3 355,775 - Shewana3_0320 0.70 -0.0 355,843 + Shewana3_0320 0.76 +0.7 355,991 - Shewana3_0320 0.88 +0.4 356,150 - +1.3 356,173 - -0.1 356,183 - -1.7 356,183 - -1.6 356,282 - Shewana3_0321 0.21 +0.0 356,370 + Shewana3_0321 0.41 +1.8 356,482 + Shewana3_0321 0.65 -1.4 356,500 - Shewana3_0321 0.69 -0.0 356,503 + Shewana3_0321 0.70 +0.2 356,529 + Shewana3_0321 0.75 +0.1 356,613 + +0.4 356,737 + +0.3 356,765 + -2.0 356,831 - +1.0 356,877 - +0.3 356,903 + -0.9 356,924 + -0.0 357,123 + Shewana3_0322 0.21 +0.5 357,138 - Shewana3_0322 0.23 +0.2 357,192 - Shewana3_0322 0.31 +0.6 357,326 + Shewana3_0322 0.52 +0.1 357,331 + Shewana3_0322 0.53 -0.0 357,339 + Shewana3_0322 0.54 +1.1 357,339 + Shewana3_0322 0.54 +0.3 357,439 + Shewana3_0322 0.69 -1.7 357,447 - Shewana3_0322 0.71 -1.2 357,508 + Shewana3_0322 0.80 -2.3 357,565 + Shewana3_0322 0.89 -0.2 357,569 - Shewana3_0322 0.89 -1.6
Or see this region's nucleotide sequence