Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0293 and Shewana3_0294 are separated by 283 nucleotides Shewana3_0294 and Shewana3_0295 are separated by 4 nucleotides
Shewana3_0293: Shewana3_0293 - anaerobic C4-dicarboxylate transporter (RefSeq), at 325,290 to 326,633
_0293
Shewana3_0294: Shewana3_0294 - hypothetical protein (RefSeq), at 326,917 to 328,095
_0294
Shewana3_0295: Shewana3_0295 - aminotransferase, class V (RefSeq), at 328,100 to 329,221
_0295
Position (kb) 326
327
328
329 Strain fitness (log2 ratio) -2
-1
0
1 at 325.958 kb on + strand, within Shewana3_0293 at 326.037 kb on - strand, within Shewana3_0293 at 326.066 kb on - strand, within Shewana3_0293 at 326.146 kb on - strand, within Shewana3_0293 at 326.309 kb on - strand, within Shewana3_0293 at 326.340 kb on + strand, within Shewana3_0293 at 326.509 kb on - strand at 326.527 kb on - strand at 326.573 kb on - strand at 326.677 kb on - strand at 326.929 kb on + strand at 326.945 kb on - strand at 327.008 kb on - strand at 327.008 kb on - strand at 327.085 kb on - strand, within Shewana3_0294 at 327.087 kb on + strand, within Shewana3_0294 at 327.124 kb on + strand, within Shewana3_0294 at 327.124 kb on + strand, within Shewana3_0294 at 327.132 kb on - strand, within Shewana3_0294 at 327.134 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.173 kb on - strand, within Shewana3_0294 at 327.601 kb on + strand, within Shewana3_0294 at 327.609 kb on - strand, within Shewana3_0294 at 327.657 kb on + strand, within Shewana3_0294 at 327.756 kb on + strand, within Shewana3_0294 at 327.824 kb on - strand, within Shewana3_0294 at 328.030 kb on + strand at 328.093 kb on - strand at 328.096 kb on + strand at 328.283 kb on + strand, within Shewana3_0295 at 328.338 kb on - strand, within Shewana3_0295 at 328.342 kb on - strand, within Shewana3_0295 at 328.605 kb on + strand, within Shewana3_0295 at 328.747 kb on - strand, within Shewana3_0295 at 328.747 kb on - strand, within Shewana3_0295 at 328.749 kb on - strand, within Shewana3_0295 at 328.786 kb on + strand, within Shewana3_0295 at 328.807 kb on - strand, within Shewana3_0295 at 328.892 kb on - strand, within Shewana3_0295 at 328.928 kb on + strand, within Shewana3_0295
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 325,958 + Shewana3_0293 0.50 -0.1 326,037 - Shewana3_0293 0.56 -1.5 326,066 - Shewana3_0293 0.58 -1.4 326,146 - Shewana3_0293 0.64 +0.0 326,309 - Shewana3_0293 0.76 -1.0 326,340 + Shewana3_0293 0.78 -1.4 326,509 - +0.3 326,527 - -2.4 326,573 - +0.5 326,677 - +0.2 326,929 + +0.1 326,945 - +0.9 327,008 - -0.1 327,008 - -1.7 327,085 - Shewana3_0294 0.14 +0.2 327,087 + Shewana3_0294 0.14 +0.5 327,124 + Shewana3_0294 0.18 +0.3 327,124 + Shewana3_0294 0.18 +0.5 327,132 - Shewana3_0294 0.18 +0.5 327,134 + Shewana3_0294 0.18 +1.0 327,165 + Shewana3_0294 0.21 +0.6 327,165 + Shewana3_0294 0.21 +0.2 327,165 + Shewana3_0294 0.21 +0.2 327,165 + Shewana3_0294 0.21 -2.0 327,165 + Shewana3_0294 0.21 +0.5 327,165 + Shewana3_0294 0.21 +1.6 327,173 - Shewana3_0294 0.22 -0.6 327,601 + Shewana3_0294 0.58 -1.7 327,609 - Shewana3_0294 0.59 -1.4 327,657 + Shewana3_0294 0.63 +0.2 327,756 + Shewana3_0294 0.71 +0.4 327,824 - Shewana3_0294 0.77 +0.3 328,030 + -0.6 328,093 - -0.2 328,096 + -1.1 328,283 + Shewana3_0295 0.16 -1.5 328,338 - Shewana3_0295 0.21 +0.5 328,342 - Shewana3_0295 0.22 +0.2 328,605 + Shewana3_0295 0.45 -0.5 328,747 - Shewana3_0295 0.58 -1.6 328,747 - Shewana3_0295 0.58 +0.5 328,749 - Shewana3_0295 0.58 +0.0 328,786 + Shewana3_0295 0.61 -1.3 328,807 - Shewana3_0295 0.63 +0.8 328,892 - Shewana3_0295 0.71 +0.1 328,928 + Shewana3_0295 0.74 -1.0
Or see this region's nucleotide sequence