Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0291 and Shewana3_0292 are separated by 105 nucleotides Shewana3_0292 and Shewana3_0293 are separated by 80 nucleotides
Shewana3_0291: Shewana3_0291 - Zn-dependent hydrolase of the beta-lactamase fold (RefSeq), at 323,374 to 324,492
_0291
Shewana3_0292: Shewana3_0292 - TetR family transcriptional regulator (RefSeq), at 324,598 to 325,209
_0292
Shewana3_0293: Shewana3_0293 - anaerobic C4-dicarboxylate transporter (RefSeq), at 325,290 to 326,633
_0293
Position (kb) 324
325
326 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 323.612 kb on + strand, within Shewana3_0291 at 323.643 kb on - strand, within Shewana3_0291 at 323.729 kb on - strand, within Shewana3_0291 at 323.900 kb on + strand, within Shewana3_0291 at 324.077 kb on - strand, within Shewana3_0291 at 324.365 kb on - strand, within Shewana3_0291 at 324.810 kb on + strand, within Shewana3_0292 at 324.810 kb on + strand, within Shewana3_0292 at 325.102 kb on - strand, within Shewana3_0292 at 325.102 kb on - strand, within Shewana3_0292 at 325.103 kb on - strand, within Shewana3_0292 at 325.139 kb on + strand, within Shewana3_0292 at 325.342 kb on - strand at 325.507 kb on + strand, within Shewana3_0293 at 325.608 kb on + strand, within Shewana3_0293 at 325.636 kb on - strand, within Shewana3_0293 at 325.674 kb on + strand, within Shewana3_0293 at 325.682 kb on - strand, within Shewana3_0293 at 325.682 kb on - strand, within Shewana3_0293 at 325.717 kb on + strand, within Shewana3_0293 at 325.725 kb on - strand, within Shewana3_0293 at 325.958 kb on + strand, within Shewana3_0293 at 326.037 kb on - strand, within Shewana3_0293 at 326.066 kb on - strand, within Shewana3_0293 at 326.146 kb on - strand, within Shewana3_0293
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 323,612 + Shewana3_0291 0.21 +0.8 323,643 - Shewana3_0291 0.24 -1.0 323,729 - Shewana3_0291 0.32 -5.6 323,900 + Shewana3_0291 0.47 -0.1 324,077 - Shewana3_0291 0.63 -0.4 324,365 - Shewana3_0291 0.89 -1.7 324,810 + Shewana3_0292 0.35 +0.5 324,810 + Shewana3_0292 0.35 +0.8 325,102 - Shewana3_0292 0.82 +0.5 325,102 - Shewana3_0292 0.82 -1.1 325,103 - Shewana3_0292 0.83 +0.7 325,139 + Shewana3_0292 0.88 -1.5 325,342 - -1.6 325,507 + Shewana3_0293 0.16 +0.9 325,608 + Shewana3_0293 0.24 +0.1 325,636 - Shewana3_0293 0.26 -0.0 325,674 + Shewana3_0293 0.29 -0.5 325,682 - Shewana3_0293 0.29 +1.1 325,682 - Shewana3_0293 0.29 -1.2 325,717 + Shewana3_0293 0.32 +0.4 325,725 - Shewana3_0293 0.32 +0.3 325,958 + Shewana3_0293 0.50 -0.1 326,037 - Shewana3_0293 0.56 -1.5 326,066 - Shewana3_0293 0.58 -1.4 326,146 - Shewana3_0293 0.64 +0.0
Or see this region's nucleotide sequence