Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4156 and Shewana3_4157 are separated by 631 nucleotides Shewana3_4157 and Shewana3_4158 are separated by 77 nucleotides Shewana3_4158 and Shewana3_4159 are separated by 336 nucleotides
Shewana3_4156: Shewana3_4156 - outer membrane efflux protein (RefSeq), at 17,444 to 18,784
_4156
Shewana3_4157: Shewana3_4157 - Co/Zn/Cd efflux system component (RefSeq), at 19,416 to 20,315
_4157
Shewana3_4158: Shewana3_4158 - MerR family transcriptional regulator (RefSeq), at 20,393 to 20,800
_4158
Shewana3_4159: Shewana3_4159 - putative transposase (RefSeq), at 21,137 to 21,307
_4159
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 18.423 kb on + strand, within Shewana3_4156 at 18.560 kb on + strand, within Shewana3_4156 at 18.644 kb on - strand, within Shewana3_4156 at 19.050 kb on - strand at 19.276 kb on - strand at 19.422 kb on - strand at 19.422 kb on - strand at 19.427 kb on - strand at 19.497 kb on + strand at 19.695 kb on + strand, within Shewana3_4157 at 19.695 kb on + strand, within Shewana3_4157 at 19.708 kb on - strand, within Shewana3_4157 at 19.983 kb on + strand, within Shewana3_4157 at 20.154 kb on + strand, within Shewana3_4157 at 20.157 kb on - strand, within Shewana3_4157 at 20.162 kb on - strand, within Shewana3_4157 at 20.162 kb on - strand, within Shewana3_4157 at 20.322 kb on + strand at 20.330 kb on - strand at 20.470 kb on + strand, within Shewana3_4158 at 20.470 kb on + strand, within Shewana3_4158 at 20.472 kb on + strand, within Shewana3_4158 at 20.478 kb on - strand, within Shewana3_4158 at 20.760 kb on - strand at 20.783 kb on - strand at 21.097 kb on - strand at 21.182 kb on + strand, within Shewana3_4159
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 18,423 + Shewana3_4156 0.73 +0.5 18,560 + Shewana3_4156 0.83 -0.1 18,644 - Shewana3_4156 0.89 -0.1 19,050 - +0.4 19,276 - +0.4 19,422 - +0.6 19,422 - +0.4 19,427 - -0.3 19,497 + -0.2 19,695 + Shewana3_4157 0.31 +0.6 19,695 + Shewana3_4157 0.31 +0.1 19,708 - Shewana3_4157 0.32 -1.3 19,983 + Shewana3_4157 0.63 +0.5 20,154 + Shewana3_4157 0.82 -0.3 20,157 - Shewana3_4157 0.82 +0.6 20,162 - Shewana3_4157 0.83 +0.2 20,162 - Shewana3_4157 0.83 -0.6 20,322 + +0.7 20,330 - -1.4 20,470 + Shewana3_4158 0.19 -0.2 20,470 + Shewana3_4158 0.19 -3.0 20,472 + Shewana3_4158 0.19 -2.6 20,478 - Shewana3_4158 0.21 -0.9 20,760 - +0.5 20,783 - -1.2 21,097 - -0.4 21,182 + Shewana3_4159 0.26 +0.2
Or see this region's nucleotide sequence