Strain Fitness in Shewanella amazonensis SB2B around Sama_0888

Experiment: Gly-Glu

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0887 and Sama_0888 are separated by 252 nucleotidesSama_0888 and rpsP are separated by 157 nucleotidesrpsP and rimM are separated by 20 nucleotidesrimM and trmD are separated by 15 nucleotides Sama_0887: Sama_0887 - hypothetical protein (RefSeq), at 1,075,492 to 1,076,280 _0887 Sama_0888: Sama_0888 - signal recognition particle protein (RefSeq), at 1,076,533 to 1,077,906 _0888 Sama_0889: rpsP - 30S ribosomal protein S16 (RefSeq), at 1,078,064 to 1,078,315 rpsP Sama_0890: rimM - 16S rRNA-processing protein RimM (RefSeq), at 1,078,336 to 1,078,866 rimM Sama_0891: trmD - tRNA (guanine-N(1)-)-methyltransferase (RefSeq), at 1,078,882 to 1,079,634 trmD Position (kb) 1076 1077 1078Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1075.856 kb on + strand, within Sama_0887at 1075.967 kb on - strand, within Sama_0887at 1075.997 kb on + strand, within Sama_0887at 1076.000 kb on - strand, within Sama_0887at 1076.000 kb on - strand, within Sama_0887at 1076.000 kb on - strand, within Sama_0887at 1076.153 kb on - strand, within Sama_0887at 1076.241 kb on + strandat 1076.285 kb on + strandat 1076.350 kb on - strandat 1076.355 kb on - strandat 1076.387 kb on - strandat 1076.387 kb on - strandat 1076.387 kb on - strandat 1076.417 kb on + strandat 1076.426 kb on + strandat 1076.427 kb on - strandat 1076.446 kb on + strandat 1076.447 kb on - strandat 1076.464 kb on + strandat 1076.464 kb on + strandat 1076.465 kb on - strandat 1076.470 kb on - strandat 1077.870 kb on + strandat 1077.870 kb on + strandat 1077.870 kb on + strandat 1077.870 kb on + strandat 1077.870 kb on + strandat 1077.870 kb on + strandat 1077.870 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu
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1,075,856 + Sama_0887 0.46 -1.7
1,075,967 - Sama_0887 0.60 -2.3
1,075,997 + Sama_0887 0.64 -1.3
1,076,000 - Sama_0887 0.64 -1.9
1,076,000 - Sama_0887 0.64 +0.7
1,076,000 - Sama_0887 0.64 -0.9
1,076,153 - Sama_0887 0.84 -3.2
1,076,241 + -2.3
1,076,285 + -1.9
1,076,350 - -3.8
1,076,355 - -0.1
1,076,387 - +0.1
1,076,387 - -0.8
1,076,387 - -0.7
1,076,417 + -1.1
1,076,426 + -1.8
1,076,427 - +0.1
1,076,446 + -0.7
1,076,447 - -0.3
1,076,464 + -1.9
1,076,464 + +0.3
1,076,465 - +0.3
1,076,470 - +0.8
1,077,870 + +0.1
1,077,870 + -2.1
1,077,870 + +0.9
1,077,870 + -0.4
1,077,870 + +0.1
1,077,870 + +0.9
1,077,870 + -1.2

Or see this region's nucleotide sequence