Strain Fitness in Shewanella oneidensis MR-1 around SO0456

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0455 and SO0456 are separated by 102 nucleotidesSO0456 and SO0458 are separated by 522 nucleotidesSO0458 and SO0459 are separated by 317 nucleotides SO0455: SO0455 - hypothetical transporter (NCBI ptt file), at 480,304 to 482,337 SO0455 SO0456: SO0456 - immunogenic-related protein (NCBI ptt file), at 482,440 to 483,396 SO0456 SO0458: SO0458 - hypothetical protein (NCBI ptt file), at 483,919 to 484,041 SO0458 SO0459: SO0459 - conserved hypothetical protein (NCBI ptt file), at 484,359 to 485,840 SO0459 Position (kb) 482 483 484Strain fitness (log2 ratio) -1 0 1 2at 481.554 kb on - strand, within SO0455at 481.643 kb on - strand, within SO0455at 481.644 kb on + strand, within SO0455at 481.701 kb on + strand, within SO0455at 481.777 kb on - strand, within SO0455at 481.800 kb on - strand, within SO0455at 481.822 kb on + strand, within SO0455at 481.828 kb on - strand, within SO0455at 481.953 kb on + strand, within SO0455at 481.990 kb on + strand, within SO0455at 481.998 kb on - strand, within SO0455at 482.105 kb on + strand, within SO0455at 482.119 kb on + strand, within SO0455at 482.119 kb on + strand, within SO0455at 482.120 kb on + strand, within SO0455at 482.127 kb on - strand, within SO0455at 482.143 kb on - strandat 482.203 kb on + strandat 482.273 kb on + strandat 482.273 kb on + strandat 482.281 kb on - strandat 482.303 kb on - strandat 482.330 kb on - strandat 482.352 kb on + strandat 482.352 kb on + strandat 482.352 kb on + strandat 482.357 kb on + strandat 482.360 kb on - strandat 482.360 kb on - strandat 482.385 kb on - strandat 482.393 kb on + strandat 482.398 kb on + strandat 482.400 kb on - strandat 482.401 kb on - strandat 482.424 kb on + strandat 482.424 kb on + strandat 482.424 kb on + strandat 482.437 kb on + strandat 482.437 kb on + strandat 482.437 kb on + strandat 482.437 kb on + strandat 482.437 kb on + strandat 482.437 kb on + strandat 482.437 kb on + strandat 482.437 kb on + strandat 482.445 kb on - strandat 482.445 kb on - strandat 482.445 kb on - strandat 482.445 kb on - strandat 482.445 kb on - strandat 482.445 kb on - strandat 482.445 kb on - strandat 482.482 kb on - strandat 482.528 kb on + strandat 482.540 kb on + strand, within SO0456at 482.596 kb on + strand, within SO0456at 482.766 kb on + strand, within SO0456at 482.800 kb on + strand, within SO0456at 482.800 kb on + strand, within SO0456at 482.808 kb on - strand, within SO0456at 482.808 kb on - strand, within SO0456at 482.808 kb on - strand, within SO0456at 482.808 kb on - strand, within SO0456at 482.808 kb on - strand, within SO0456at 482.808 kb on - strand, within SO0456at 482.808 kb on - strand, within SO0456at 482.815 kb on + strand, within SO0456at 482.815 kb on + strand, within SO0456at 482.815 kb on + strand, within SO0456at 482.815 kb on + strand, within SO0456at 482.815 kb on - strand, within SO0456at 482.823 kb on - strand, within SO0456at 482.882 kb on + strand, within SO0456at 482.915 kb on + strand, within SO0456at 483.007 kb on + strand, within SO0456at 483.139 kb on + strand, within SO0456at 483.139 kb on + strand, within SO0456at 483.141 kb on - strand, within SO0456at 483.142 kb on - strand, within SO0456at 483.201 kb on - strand, within SO0456at 483.224 kb on + strand, within SO0456at 483.269 kb on + strand, within SO0456at 483.276 kb on + strand, within SO0456at 483.343 kb on + strandat 483.343 kb on + strandat 483.345 kb on + strandat 483.349 kb on - strandat 483.352 kb on + strandat 483.360 kb on - strandat 483.360 kb on - strandat 483.552 kb on + strandat 483.585 kb on + strandat 483.591 kb on - strandat 483.618 kb on - strandat 483.728 kb on + strandat 483.822 kb on + strandat 483.822 kb on + strandat 483.830 kb on - strandat 483.830 kb on - strandat 483.866 kb on - strandat 483.875 kb on + strandat 483.877 kb on - strandat 483.893 kb on - strandat 483.900 kb on + strandat 483.907 kb on + strandat 483.916 kb on + strandat 483.971 kb on - strand, within SO0458at 484.077 kb on + strandat 484.085 kb on - strandat 484.213 kb on + strandat 484.213 kb on + strandat 484.213 kb on + strandat 484.213 kb on + strandat 484.213 kb on + strandat 484.213 kb on + strandat 484.215 kb on + strandat 484.221 kb on - strandat 484.221 kb on - strandat 484.221 kb on - strandat 484.240 kb on - strandat 484.246 kb on + strandat 484.246 kb on + strandat 484.254 kb on - strandat 484.254 kb on - strandat 484.382 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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481,554 - SO0455 0.61 +1.4
481,643 - SO0455 0.66 -0.2
481,644 + SO0455 0.66 +0.5
481,701 + SO0455 0.69 +1.1
481,777 - SO0455 0.72 -1.3
481,800 - SO0455 0.74 +0.3
481,822 + SO0455 0.75 +0.9
481,828 - SO0455 0.75 +0.4
481,953 + SO0455 0.81 +0.0
481,990 + SO0455 0.83 +0.4
481,998 - SO0455 0.83 +0.9
482,105 + SO0455 0.89 +0.4
482,119 + SO0455 0.89 -0.2
482,119 + SO0455 0.89 +0.5
482,120 + SO0455 0.89 +0.7
482,127 - SO0455 0.90 +0.7
482,143 - +0.9
482,203 + +0.9
482,273 + +0.3
482,273 + +0.5
482,281 - -1.2
482,303 - +1.3
482,330 - -0.3
482,352 + +1.9
482,352 + +0.2
482,352 + +0.3
482,357 + +0.2
482,360 - -0.5
482,360 - +0.5
482,385 - +0.4
482,393 + +1.9
482,398 + -0.0
482,400 - +0.4
482,401 - +0.4
482,424 + +0.8
482,424 + +0.1
482,424 + +0.3
482,437 + +0.4
482,437 + +1.1
482,437 + +0.2
482,437 + +0.7
482,437 + +0.2
482,437 + +0.0
482,437 + +0.4
482,437 + +0.7
482,445 - +0.5
482,445 - -0.0
482,445 - +0.1
482,445 - +0.6
482,445 - +1.9
482,445 - +0.2
482,445 - -0.4
482,482 - +0.3
482,528 + +0.3
482,540 + SO0456 0.10 +1.1
482,596 + SO0456 0.16 +0.9
482,766 + SO0456 0.34 +0.3
482,800 + SO0456 0.38 +0.4
482,800 + SO0456 0.38 +0.3
482,808 - SO0456 0.38 +0.7
482,808 - SO0456 0.38 +0.8
482,808 - SO0456 0.38 +0.6
482,808 - SO0456 0.38 +0.2
482,808 - SO0456 0.38 +0.3
482,808 - SO0456 0.38 +0.3
482,808 - SO0456 0.38 +0.2
482,815 + SO0456 0.39 +0.9
482,815 + SO0456 0.39 -0.2
482,815 + SO0456 0.39 -0.9
482,815 + SO0456 0.39 +0.7
482,815 - SO0456 0.39 -1.3
482,823 - SO0456 0.40 +0.8
482,882 + SO0456 0.46 +0.7
482,915 + SO0456 0.50 -1.0
483,007 + SO0456 0.59 +0.2
483,139 + SO0456 0.73 +0.3
483,139 + SO0456 0.73 +0.6
483,141 - SO0456 0.73 +0.6
483,142 - SO0456 0.73 +0.0
483,201 - SO0456 0.80 +1.0
483,224 + SO0456 0.82 +0.3
483,269 + SO0456 0.87 +0.4
483,276 + SO0456 0.87 +0.5
483,343 + -0.8
483,343 + +0.9
483,345 + -0.1
483,349 - +0.6
483,352 + +0.6
483,360 - +0.4
483,360 - +1.4
483,552 + -0.1
483,585 + +0.4
483,591 - +0.1
483,618 - -0.5
483,728 + -0.2
483,822 + +0.1
483,822 + -0.1
483,830 - +0.4
483,830 - +0.4
483,866 - +0.1
483,875 + +0.1
483,877 - -0.7
483,893 - +0.3
483,900 + -0.5
483,907 + -1.0
483,916 + -0.3
483,971 - SO0458 0.42 +1.2
484,077 + -0.5
484,085 - +0.3
484,213 + -0.1
484,213 + +0.3
484,213 + -1.0
484,213 + +0.3
484,213 + +0.7
484,213 + -0.3
484,215 + +0.6
484,221 - -0.1
484,221 - +0.1
484,221 - -0.3
484,240 - -0.6
484,246 + +0.3
484,246 + -0.3
484,254 - -0.1
484,254 - +0.1
484,382 + -0.1

Or see this region's nucleotide sequence