Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0455 and SO0456 are separated by 102 nucleotides SO0456 and SO0458 are separated by 522 nucleotides SO0458 and SO0459 are separated by 317 nucleotides
SO0455: SO0455 - hypothetical transporter (NCBI ptt file), at 480,304 to 482,337
SO0455
SO0456: SO0456 - immunogenic-related protein (NCBI ptt file), at 482,440 to 483,396
SO0456
SO0458: SO0458 - hypothetical protein (NCBI ptt file), at 483,919 to 484,041
SO0458
SO0459: SO0459 - conserved hypothetical protein (NCBI ptt file), at 484,359 to 485,840
SO0459
Position (kb) 482
483
484 Strain fitness (log2 ratio) -1
0
1
2 at 481.554 kb on - strand, within SO0455 at 481.643 kb on - strand, within SO0455 at 481.644 kb on + strand, within SO0455 at 481.701 kb on + strand, within SO0455 at 481.777 kb on - strand, within SO0455 at 481.800 kb on - strand, within SO0455 at 481.822 kb on + strand, within SO0455 at 481.828 kb on - strand, within SO0455 at 481.953 kb on + strand, within SO0455 at 481.990 kb on + strand, within SO0455 at 481.998 kb on - strand, within SO0455 at 482.105 kb on + strand, within SO0455 at 482.119 kb on + strand, within SO0455 at 482.119 kb on + strand, within SO0455 at 482.120 kb on + strand, within SO0455 at 482.127 kb on - strand, within SO0455 at 482.143 kb on - strand at 482.203 kb on + strand at 482.273 kb on + strand at 482.273 kb on + strand at 482.281 kb on - strand at 482.303 kb on - strand at 482.330 kb on - strand at 482.352 kb on + strand at 482.352 kb on + strand at 482.352 kb on + strand at 482.357 kb on + strand at 482.360 kb on - strand at 482.360 kb on - strand at 482.385 kb on - strand at 482.393 kb on + strand at 482.398 kb on + strand at 482.400 kb on - strand at 482.401 kb on - strand at 482.424 kb on + strand at 482.424 kb on + strand at 482.424 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.482 kb on - strand at 482.528 kb on + strand at 482.540 kb on + strand, within SO0456 at 482.596 kb on + strand, within SO0456 at 482.766 kb on + strand, within SO0456 at 482.800 kb on + strand, within SO0456 at 482.800 kb on + strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.815 kb on + strand, within SO0456 at 482.815 kb on + strand, within SO0456 at 482.815 kb on + strand, within SO0456 at 482.815 kb on + strand, within SO0456 at 482.815 kb on - strand, within SO0456 at 482.823 kb on - strand, within SO0456 at 482.882 kb on + strand, within SO0456 at 482.915 kb on + strand, within SO0456 at 483.007 kb on + strand, within SO0456 at 483.139 kb on + strand, within SO0456 at 483.139 kb on + strand, within SO0456 at 483.141 kb on - strand, within SO0456 at 483.142 kb on - strand, within SO0456 at 483.201 kb on - strand, within SO0456 at 483.224 kb on + strand, within SO0456 at 483.269 kb on + strand, within SO0456 at 483.276 kb on + strand, within SO0456 at 483.343 kb on + strand at 483.343 kb on + strand at 483.345 kb on + strand at 483.349 kb on - strand at 483.352 kb on + strand at 483.360 kb on - strand at 483.360 kb on - strand at 483.552 kb on + strand at 483.585 kb on + strand at 483.591 kb on - strand at 483.618 kb on - strand at 483.728 kb on + strand at 483.822 kb on + strand at 483.822 kb on + strand at 483.830 kb on - strand at 483.830 kb on - strand at 483.866 kb on - strand at 483.875 kb on + strand at 483.877 kb on - strand at 483.893 kb on - strand at 483.900 kb on + strand at 483.907 kb on + strand at 483.916 kb on + strand at 483.971 kb on - strand, within SO0458 at 484.077 kb on + strand at 484.085 kb on - strand at 484.213 kb on + strand at 484.213 kb on + strand at 484.213 kb on + strand at 484.213 kb on + strand at 484.213 kb on + strand at 484.213 kb on + strand at 484.215 kb on + strand at 484.221 kb on - strand at 484.221 kb on - strand at 484.221 kb on - strand at 484.240 kb on - strand at 484.246 kb on + strand at 484.246 kb on + strand at 484.254 kb on - strand at 484.254 kb on - strand at 484.382 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 481,554 - SO0455 0.61 +1.4 481,643 - SO0455 0.66 -0.2 481,644 + SO0455 0.66 +0.5 481,701 + SO0455 0.69 +1.1 481,777 - SO0455 0.72 -1.3 481,800 - SO0455 0.74 +0.3 481,822 + SO0455 0.75 +0.9 481,828 - SO0455 0.75 +0.4 481,953 + SO0455 0.81 +0.0 481,990 + SO0455 0.83 +0.4 481,998 - SO0455 0.83 +0.9 482,105 + SO0455 0.89 +0.4 482,119 + SO0455 0.89 -0.2 482,119 + SO0455 0.89 +0.5 482,120 + SO0455 0.89 +0.7 482,127 - SO0455 0.90 +0.7 482,143 - +0.9 482,203 + +0.9 482,273 + +0.3 482,273 + +0.5 482,281 - -1.2 482,303 - +1.3 482,330 - -0.3 482,352 + +1.9 482,352 + +0.2 482,352 + +0.3 482,357 + +0.2 482,360 - -0.5 482,360 - +0.5 482,385 - +0.4 482,393 + +1.9 482,398 + -0.0 482,400 - +0.4 482,401 - +0.4 482,424 + +0.8 482,424 + +0.1 482,424 + +0.3 482,437 + +0.4 482,437 + +1.1 482,437 + +0.2 482,437 + +0.7 482,437 + +0.2 482,437 + +0.0 482,437 + +0.4 482,437 + +0.7 482,445 - +0.5 482,445 - -0.0 482,445 - +0.1 482,445 - +0.6 482,445 - +1.9 482,445 - +0.2 482,445 - -0.4 482,482 - +0.3 482,528 + +0.3 482,540 + SO0456 0.10 +1.1 482,596 + SO0456 0.16 +0.9 482,766 + SO0456 0.34 +0.3 482,800 + SO0456 0.38 +0.4 482,800 + SO0456 0.38 +0.3 482,808 - SO0456 0.38 +0.7 482,808 - SO0456 0.38 +0.8 482,808 - SO0456 0.38 +0.6 482,808 - SO0456 0.38 +0.2 482,808 - SO0456 0.38 +0.3 482,808 - SO0456 0.38 +0.3 482,808 - SO0456 0.38 +0.2 482,815 + SO0456 0.39 +0.9 482,815 + SO0456 0.39 -0.2 482,815 + SO0456 0.39 -0.9 482,815 + SO0456 0.39 +0.7 482,815 - SO0456 0.39 -1.3 482,823 - SO0456 0.40 +0.8 482,882 + SO0456 0.46 +0.7 482,915 + SO0456 0.50 -1.0 483,007 + SO0456 0.59 +0.2 483,139 + SO0456 0.73 +0.3 483,139 + SO0456 0.73 +0.6 483,141 - SO0456 0.73 +0.6 483,142 - SO0456 0.73 +0.0 483,201 - SO0456 0.80 +1.0 483,224 + SO0456 0.82 +0.3 483,269 + SO0456 0.87 +0.4 483,276 + SO0456 0.87 +0.5 483,343 + -0.8 483,343 + +0.9 483,345 + -0.1 483,349 - +0.6 483,352 + +0.6 483,360 - +0.4 483,360 - +1.4 483,552 + -0.1 483,585 + +0.4 483,591 - +0.1 483,618 - -0.5 483,728 + -0.2 483,822 + +0.1 483,822 + -0.1 483,830 - +0.4 483,830 - +0.4 483,866 - +0.1 483,875 + +0.1 483,877 - -0.7 483,893 - +0.3 483,900 + -0.5 483,907 + -1.0 483,916 + -0.3 483,971 - SO0458 0.42 +1.2 484,077 + -0.5 484,085 - +0.3 484,213 + -0.1 484,213 + +0.3 484,213 + -1.0 484,213 + +0.3 484,213 + +0.7 484,213 + -0.3 484,215 + +0.6 484,221 - -0.1 484,221 - +0.1 484,221 - -0.3 484,240 - -0.6 484,246 + +0.3 484,246 + -0.3 484,254 - -0.1 484,254 - +0.1 484,382 + -0.1
Or see this region's nucleotide sequence