Strain Fitness in Dechlorosoma suillum PS around Dsui_3373

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3372 and Dsui_3373 are separated by 16 nucleotidesDsui_3373 and Dsui_3374 are separated by 20 nucleotidesDsui_3374 and Dsui_3375 are separated by 143 nucleotidesDsui_3375 and Dsui_3376 are separated by 180 nucleotides Dsui_3372: Dsui_3372 - hypothetical protein, at 3,613,262 to 3,615,406 _3372 Dsui_3373: Dsui_3373 - Na+/phosphate symporter, at 3,615,423 to 3,617,114 _3373 Dsui_3374: Dsui_3374 - cyclic nucleotide-binding protein, at 3,617,135 to 3,617,500 _3374 Dsui_3375: Dsui_3375 - hypothetical protein, at 3,617,644 to 3,617,820 _3375 Dsui_3376: Dsui_3376 - aspartate/tyrosine/aromatic aminotransferase, at 3,618,001 to 3,619,167 _3376 Position (kb) 3615 3616 3617 3618Strain fitness (log2 ratio) -1 0 1 2at 3614.438 kb on - strand, within Dsui_3372at 3614.545 kb on + strand, within Dsui_3372at 3614.717 kb on - strand, within Dsui_3372at 3614.834 kb on - strand, within Dsui_3372at 3614.889 kb on - strand, within Dsui_3372at 3615.028 kb on - strand, within Dsui_3372at 3615.029 kb on - strandat 3615.096 kb on - strand, within Dsui_3372at 3615.120 kb on + strand, within Dsui_3372at 3615.162 kb on + strand, within Dsui_3372at 3615.288 kb on + strandat 3615.304 kb on + strandat 3615.379 kb on - strandat 3615.514 kb on + strandat 3615.573 kb on + strandat 3615.775 kb on + strand, within Dsui_3373at 3615.807 kb on + strand, within Dsui_3373at 3615.844 kb on + strand, within Dsui_3373at 3616.024 kb on + strand, within Dsui_3373at 3616.102 kb on + strandat 3616.241 kb on + strand, within Dsui_3373at 3616.260 kb on + strand, within Dsui_3373at 3616.327 kb on + strand, within Dsui_3373at 3616.481 kb on + strand, within Dsui_3373at 3616.568 kb on - strand, within Dsui_3373at 3616.576 kb on + strand, within Dsui_3373at 3616.584 kb on - strand, within Dsui_3373at 3616.584 kb on - strandat 3616.603 kb on - strandat 3616.704 kb on + strand, within Dsui_3373at 3616.716 kb on + strand, within Dsui_3373at 3616.716 kb on + strand, within Dsui_3373at 3616.745 kb on + strand, within Dsui_3373at 3616.835 kb on - strand, within Dsui_3373at 3616.949 kb on + strandat 3617.150 kb on - strandat 3617.208 kb on + strand, within Dsui_3374at 3617.208 kb on + strand, within Dsui_3374at 3617.247 kb on - strandat 3617.335 kb on + strand, within Dsui_3374at 3617.354 kb on + strand, within Dsui_3374at 3617.367 kb on + strand, within Dsui_3374at 3617.428 kb on - strandat 3617.531 kb on + strandat 3617.769 kb on - strand, within Dsui_3375

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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3,614,438 - Dsui_3372 0.55 +0.7
3,614,545 + Dsui_3372 0.60 -0.4
3,614,717 - Dsui_3372 0.68 -0.9
3,614,834 - Dsui_3372 0.73 +0.1
3,614,889 - Dsui_3372 0.76 +1.0
3,615,028 - Dsui_3372 0.82 -0.5
3,615,029 - -0.2
3,615,096 - Dsui_3372 0.86 +0.8
3,615,120 + Dsui_3372 0.87 +0.0
3,615,162 + Dsui_3372 0.89 +0.3
3,615,288 + +0.3
3,615,304 + +0.2
3,615,379 - +1.1
3,615,514 + +0.5
3,615,573 + +0.8
3,615,775 + Dsui_3373 0.21 +0.6
3,615,807 + Dsui_3373 0.23 +0.5
3,615,844 + Dsui_3373 0.25 +0.2
3,616,024 + Dsui_3373 0.36 +0.2
3,616,102 + +2.1
3,616,241 + Dsui_3373 0.48 +0.7
3,616,260 + Dsui_3373 0.49 +0.6
3,616,327 + Dsui_3373 0.53 -0.0
3,616,481 + Dsui_3373 0.63 +0.6
3,616,568 - Dsui_3373 0.68 +0.8
3,616,576 + Dsui_3373 0.68 +0.1
3,616,584 - Dsui_3373 0.69 +0.5
3,616,584 - +2.5
3,616,603 - +1.1
3,616,704 + Dsui_3373 0.76 +0.1
3,616,716 + Dsui_3373 0.76 +0.0
3,616,716 + Dsui_3373 0.76 +0.1
3,616,745 + Dsui_3373 0.78 -0.2
3,616,835 - Dsui_3373 0.83 +0.9
3,616,949 + +0.1
3,617,150 - +0.3
3,617,208 + Dsui_3374 0.20 +0.5
3,617,208 + Dsui_3374 0.20 +0.5
3,617,247 - +0.5
3,617,335 + Dsui_3374 0.55 -0.9
3,617,354 + Dsui_3374 0.60 +0.4
3,617,367 + Dsui_3374 0.63 -0.0
3,617,428 - +0.5
3,617,531 + +0.7
3,617,769 - Dsui_3375 0.71 +0.2

Or see this region's nucleotide sequence