Strain Fitness in Dechlorosoma suillum PS around Dsui_2758

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2757 and Dsui_2758 are separated by 213 nucleotidesDsui_2758 and Dsui_2759 are separated by 283 nucleotides Dsui_2757: Dsui_2757 - spermidine synthase, at 2,916,597 to 2,917,403 _2757 Dsui_2758: Dsui_2758 - putative SAM-dependent methyltransferase, at 2,917,617 to 2,918,633 _2758 Dsui_2759: Dsui_2759 - pseudouridine synthase family protein, at 2,918,917 to 2,920,515 _2759 Position (kb) 2917 2918 2919Strain fitness (log2 ratio) -1 0 1 2at 2916.621 kb on - strandat 2916.625 kb on + strandat 2916.627 kb on - strandat 2916.690 kb on + strand, within Dsui_2757at 2916.714 kb on + strand, within Dsui_2757at 2916.714 kb on + strand, within Dsui_2757at 2916.722 kb on - strandat 2916.722 kb on - strandat 2916.854 kb on - strandat 2916.858 kb on + strand, within Dsui_2757at 2916.999 kb on + strand, within Dsui_2757at 2917.061 kb on + strand, within Dsui_2757at 2917.114 kb on + strandat 2917.157 kb on + strand, within Dsui_2757at 2917.157 kb on + strand, within Dsui_2757at 2917.203 kb on - strandat 2917.449 kb on + strandat 2917.603 kb on + strandat 2917.603 kb on + strandat 2917.618 kb on + strandat 2917.705 kb on - strandat 2917.832 kb on + strand, within Dsui_2758at 2918.123 kb on + strand, within Dsui_2758at 2918.238 kb on - strand, within Dsui_2758at 2918.276 kb on + strand, within Dsui_2758at 2918.276 kb on + strand, within Dsui_2758at 2918.325 kb on - strand, within Dsui_2758at 2918.627 kb on + strandat 2918.671 kb on + strandat 2918.671 kb on + strandat 2918.671 kb on + strandat 2918.706 kb on - strandat 2918.877 kb on + strandat 2918.885 kb on - strandat 2918.914 kb on + strandat 2918.922 kb on - strandat 2919.074 kb on + strandat 2919.231 kb on - strand, within Dsui_2759at 2919.253 kb on + strand, within Dsui_2759at 2919.306 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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2,916,621 - +1.8
2,916,625 + +0.1
2,916,627 - +0.7
2,916,690 + Dsui_2757 0.12 -0.4
2,916,714 + Dsui_2757 0.14 -0.6
2,916,714 + Dsui_2757 0.14 -1.2
2,916,722 - +0.7
2,916,722 - +1.3
2,916,854 - +2.3
2,916,858 + Dsui_2757 0.32 +1.3
2,916,999 + Dsui_2757 0.50 -1.2
2,917,061 + Dsui_2757 0.57 -0.3
2,917,114 + +0.7
2,917,157 + Dsui_2757 0.69 +1.5
2,917,157 + Dsui_2757 0.69 -1.2
2,917,203 - +1.3
2,917,449 + +2.3
2,917,603 + +0.1
2,917,603 + +0.4
2,917,618 + +0.2
2,917,705 - +2.3
2,917,832 + Dsui_2758 0.21 -0.9
2,918,123 + Dsui_2758 0.50 -0.9
2,918,238 - Dsui_2758 0.61 -1.0
2,918,276 + Dsui_2758 0.65 +0.1
2,918,276 + Dsui_2758 0.65 +0.5
2,918,325 - Dsui_2758 0.70 -0.0
2,918,627 + -0.3
2,918,671 + +0.7
2,918,671 + +1.3
2,918,671 + -0.3
2,918,706 - +0.7
2,918,877 + +1.3
2,918,885 - +0.3
2,918,914 + +0.5
2,918,922 - +1.3
2,919,074 + +0.7
2,919,231 - Dsui_2759 0.20 +1.7
2,919,253 + Dsui_2759 0.21 +0.3
2,919,306 - +2.3

Or see this region's nucleotide sequence