Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2757 and Dsui_2758 are separated by 213 nucleotides Dsui_2758 and Dsui_2759 are separated by 283 nucleotides
Dsui_2757: Dsui_2757 - spermidine synthase, at 2,916,597 to 2,917,403
_2757
Dsui_2758: Dsui_2758 - putative SAM-dependent methyltransferase, at 2,917,617 to 2,918,633
_2758
Dsui_2759: Dsui_2759 - pseudouridine synthase family protein, at 2,918,917 to 2,920,515
_2759
Position (kb)
2917
2918
2919 Strain fitness (log2 ratio)
-1
0
1
2 at 2916.621 kb on - strand at 2916.625 kb on + strand at 2916.627 kb on - strand at 2916.690 kb on + strand, within Dsui_2757 at 2916.714 kb on + strand, within Dsui_2757 at 2916.714 kb on + strand, within Dsui_2757 at 2916.722 kb on - strand at 2916.722 kb on - strand at 2916.854 kb on - strand at 2916.858 kb on + strand, within Dsui_2757 at 2916.999 kb on + strand, within Dsui_2757 at 2917.061 kb on + strand, within Dsui_2757 at 2917.114 kb on + strand at 2917.157 kb on + strand, within Dsui_2757 at 2917.157 kb on + strand, within Dsui_2757 at 2917.203 kb on - strand at 2917.449 kb on + strand at 2917.603 kb on + strand at 2917.603 kb on + strand at 2917.618 kb on + strand at 2917.705 kb on - strand at 2917.832 kb on + strand, within Dsui_2758 at 2918.123 kb on + strand, within Dsui_2758 at 2918.238 kb on - strand, within Dsui_2758 at 2918.276 kb on + strand, within Dsui_2758 at 2918.276 kb on + strand, within Dsui_2758 at 2918.325 kb on - strand, within Dsui_2758 at 2918.627 kb on + strand at 2918.671 kb on + strand at 2918.671 kb on + strand at 2918.671 kb on + strand at 2918.706 kb on - strand at 2918.877 kb on + strand at 2918.885 kb on - strand at 2918.914 kb on + strand at 2918.922 kb on - strand at 2919.074 kb on + strand at 2919.231 kb on - strand, within Dsui_2759 at 2919.253 kb on + strand, within Dsui_2759 at 2919.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 2,916,621 - +1.8 2,916,625 + +0.1 2,916,627 - +0.7 2,916,690 + Dsui_2757 0.12 -0.4 2,916,714 + Dsui_2757 0.14 -0.6 2,916,714 + Dsui_2757 0.14 -1.2 2,916,722 - +0.7 2,916,722 - +1.3 2,916,854 - +2.3 2,916,858 + Dsui_2757 0.32 +1.3 2,916,999 + Dsui_2757 0.50 -1.2 2,917,061 + Dsui_2757 0.57 -0.3 2,917,114 + +0.7 2,917,157 + Dsui_2757 0.69 +1.5 2,917,157 + Dsui_2757 0.69 -1.2 2,917,203 - +1.3 2,917,449 + +2.3 2,917,603 + +0.1 2,917,603 + +0.4 2,917,618 + +0.2 2,917,705 - +2.3 2,917,832 + Dsui_2758 0.21 -0.9 2,918,123 + Dsui_2758 0.50 -0.9 2,918,238 - Dsui_2758 0.61 -1.0 2,918,276 + Dsui_2758 0.65 +0.1 2,918,276 + Dsui_2758 0.65 +0.5 2,918,325 - Dsui_2758 0.70 -0.0 2,918,627 + -0.3 2,918,671 + +0.7 2,918,671 + +1.3 2,918,671 + -0.3 2,918,706 - +0.7 2,918,877 + +1.3 2,918,885 - +0.3 2,918,914 + +0.5 2,918,922 - +1.3 2,919,074 + +0.7 2,919,231 - Dsui_2759 0.20 +1.7 2,919,253 + Dsui_2759 0.21 +0.3 2,919,306 - +2.3
Or see this region's nucleotide sequence