Strain Fitness in Dechlorosoma suillum PS around Dsui_2754

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2752 and Dsui_2753 are separated by 5 nucleotidesDsui_2753 and Dsui_2754 are separated by 262 nucleotidesDsui_2754 and Dsui_2755 are separated by 110 nucleotidesDsui_2755 and Dsui_2756 are separated by 89 nucleotides Dsui_2752: Dsui_2752 - ABC-type multidrug transport system, ATPase and permease component, at 2,910,746 to 2,912,953 _2752 Dsui_2753: Dsui_2753 - protein of unknown function (DUF1854), at 2,912,959 to 2,913,429 _2753 Dsui_2754: Dsui_2754 - collagenase-like protease, at 2,913,692 to 2,915,578 _2754 Dsui_2755: Dsui_2755 - hypothetical protein, at 2,915,689 to 2,915,889 _2755 Dsui_2756: Dsui_2756 - hypothetical protein, at 2,915,979 to 2,916,593 _2756 Position (kb) 2913 2914 2915 2916Strain fitness (log2 ratio) -1 0 1 2 3at 2912.890 kb on + strandat 2912.890 kb on + strandat 2913.583 kb on + strandat 2913.583 kb on + strandat 2913.617 kb on - strandat 2913.622 kb on - strandat 2913.644 kb on + strandat 2913.662 kb on - strandat 2914.038 kb on + strand, within Dsui_2754at 2914.128 kb on + strand, within Dsui_2754at 2914.200 kb on + strand, within Dsui_2754at 2914.395 kb on - strand, within Dsui_2754at 2914.477 kb on + strand, within Dsui_2754at 2914.488 kb on + strand, within Dsui_2754at 2914.548 kb on + strand, within Dsui_2754at 2914.598 kb on - strandat 2914.610 kb on - strand, within Dsui_2754at 2914.735 kb on + strand, within Dsui_2754at 2914.795 kb on + strand, within Dsui_2754at 2914.810 kb on - strand, within Dsui_2754at 2914.843 kb on - strand, within Dsui_2754at 2914.930 kb on - strandat 2914.962 kb on + strand, within Dsui_2754at 2914.994 kb on - strand, within Dsui_2754at 2915.022 kb on - strand, within Dsui_2754at 2915.106 kb on + strand, within Dsui_2754at 2915.296 kb on - strandat 2915.296 kb on - strand, within Dsui_2754at 2915.423 kb on - strandat 2915.423 kb on - strandat 2915.423 kb on - strandat 2915.423 kb on - strandat 2915.423 kb on - strandat 2915.467 kb on - strandat 2915.479 kb on - strandat 2915.571 kb on - strandat 2915.639 kb on - strandat 2915.963 kb on - strandat 2915.992 kb on + strandat 2916.035 kb on - strandat 2916.157 kb on + strand, within Dsui_2756at 2916.478 kb on + strand, within Dsui_2756at 2916.505 kb on + strand, within Dsui_2756

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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2,912,890 + -0.1
2,912,890 + +0.6
2,913,583 + +0.6
2,913,583 + +0.2
2,913,617 - -0.8
2,913,622 - -0.3
2,913,644 + +0.7
2,913,662 - +1.3
2,914,038 + Dsui_2754 0.18 +0.5
2,914,128 + Dsui_2754 0.23 +1.0
2,914,200 + Dsui_2754 0.27 +0.7
2,914,395 - Dsui_2754 0.37 +0.2
2,914,477 + Dsui_2754 0.42 +2.6
2,914,488 + Dsui_2754 0.42 +1.1
2,914,548 + Dsui_2754 0.45 +0.2
2,914,598 - +1.3
2,914,610 - Dsui_2754 0.49 +0.1
2,914,735 + Dsui_2754 0.55 +0.2
2,914,795 + Dsui_2754 0.58 +0.8
2,914,810 - Dsui_2754 0.59 +0.6
2,914,843 - Dsui_2754 0.61 +0.9
2,914,930 - +3.3
2,914,962 + Dsui_2754 0.67 +1.0
2,914,994 - Dsui_2754 0.69 -1.0
2,915,022 - Dsui_2754 0.70 -0.6
2,915,106 + Dsui_2754 0.75 -0.3
2,915,296 - +2.7
2,915,296 - Dsui_2754 0.85 +0.3
2,915,423 - +0.7
2,915,423 - +1.0
2,915,423 - -0.5
2,915,423 - +0.3
2,915,423 - -0.3
2,915,467 - -0.4
2,915,479 - -0.5
2,915,571 - -0.4
2,915,639 - +0.4
2,915,963 - +0.3
2,915,992 + +0.2
2,916,035 - -1.0
2,916,157 + Dsui_2756 0.29 -1.3
2,916,478 + Dsui_2756 0.81 +1.5
2,916,505 + Dsui_2756 0.86 +0.3

Or see this region's nucleotide sequence