Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2647 and Dsui_2648 are separated by 17 nucleotides Dsui_2648 and Dsui_2649 are separated by 6 nucleotides
Dsui_2647: Dsui_2647 - subtilisin-like serine protease, at 2,799,446 to 2,801,671
_2647
Dsui_2648: Dsui_2648 - site-specific recombinase XerD, at 2,801,689 to 2,802,972
_2648
Dsui_2649: Dsui_2649 - transposase, TnpA family, at 2,802,979 to 2,805,981
_2649
Position (kb)
2801
2802
2803 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2800.710 kb on + strand, within Dsui_2647 at 2800.807 kb on - strand, within Dsui_2647 at 2800.995 kb on + strand, within Dsui_2647 at 2800.998 kb on - strand, within Dsui_2647 at 2801.030 kb on + strand, within Dsui_2647 at 2801.183 kb on + strand, within Dsui_2647 at 2801.314 kb on + strand, within Dsui_2647 at 2801.334 kb on - strand, within Dsui_2647 at 2801.416 kb on - strand, within Dsui_2647 at 2801.476 kb on + strand at 2801.488 kb on + strand at 2801.550 kb on + strand at 2801.550 kb on + strand at 2801.603 kb on + strand at 2801.610 kb on + strand at 2801.667 kb on + strand at 2801.709 kb on + strand at 2801.858 kb on + strand, within Dsui_2648 at 2801.860 kb on + strand, within Dsui_2648 at 2801.946 kb on + strand, within Dsui_2648 at 2801.954 kb on - strand, within Dsui_2648 at 2802.028 kb on - strand, within Dsui_2648 at 2802.151 kb on - strand at 2802.204 kb on - strand, within Dsui_2648 at 2802.260 kb on + strand, within Dsui_2648 at 2802.269 kb on + strand, within Dsui_2648 at 2802.295 kb on + strand, within Dsui_2648 at 2802.305 kb on + strand, within Dsui_2648 at 2802.313 kb on - strand, within Dsui_2648 at 2802.314 kb on + strand, within Dsui_2648 at 2802.428 kb on + strand, within Dsui_2648 at 2802.441 kb on - strand, within Dsui_2648 at 2802.453 kb on + strand, within Dsui_2648 at 2802.499 kb on - strand, within Dsui_2648 at 2802.569 kb on + strand, within Dsui_2648 at 2802.579 kb on + strand, within Dsui_2648 at 2802.587 kb on - strand, within Dsui_2648 at 2802.646 kb on + strand, within Dsui_2648 at 2802.672 kb on + strand, within Dsui_2648 at 2802.720 kb on + strand, within Dsui_2648 at 2802.786 kb on + strand, within Dsui_2648 at 2802.786 kb on + strand, within Dsui_2648 at 2802.794 kb on - strand, within Dsui_2648 at 2802.798 kb on + strand, within Dsui_2648 at 2802.870 kb on + strand at 2802.870 kb on + strand at 2802.878 kb on - strand at 2802.878 kb on - strand at 2802.878 kb on - strand at 2802.878 kb on - strand at 2802.878 kb on - strand at 2802.938 kb on + strand at 2802.938 kb on + strand at 2803.023 kb on + strand at 2803.047 kb on + strand at 2803.055 kb on - strand at 2803.167 kb on + strand at 2803.167 kb on + strand at 2803.167 kb on + strand at 2803.167 kb on + strand at 2803.175 kb on - strand at 2803.259 kb on + strand at 2803.279 kb on - strand at 2803.309 kb on - strand, within Dsui_2649 at 2803.340 kb on + strand, within Dsui_2649 at 2803.381 kb on - strand, within Dsui_2649 at 2803.438 kb on + strand, within Dsui_2649 at 2803.536 kb on + strand, within Dsui_2649 at 2803.543 kb on + strand, within Dsui_2649 at 2803.592 kb on + strand, within Dsui_2649 at 2803.667 kb on + strand, within Dsui_2649 at 2803.677 kb on - strand, within Dsui_2649 at 2803.726 kb on + strand, within Dsui_2649 at 2803.739 kb on - strand, within Dsui_2649 at 2803.796 kb on - strand at 2803.903 kb on - strand, within Dsui_2649 at 2803.906 kb on + strand, within Dsui_2649 at 2803.945 kb on - strand, within Dsui_2649
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 2,800,710 + Dsui_2647 0.57 -0.6 2,800,807 - Dsui_2647 0.61 +1.2 2,800,995 + Dsui_2647 0.70 +0.2 2,800,998 - Dsui_2647 0.70 +0.0 2,801,030 + Dsui_2647 0.71 +0.3 2,801,183 + Dsui_2647 0.78 -0.4 2,801,314 + Dsui_2647 0.84 -0.5 2,801,334 - Dsui_2647 0.85 -0.4 2,801,416 - Dsui_2647 0.88 -1.2 2,801,476 + +0.9 2,801,488 + +0.5 2,801,550 + -0.1 2,801,550 + -0.1 2,801,603 + -1.3 2,801,610 + +0.0 2,801,667 + -0.0 2,801,709 + +0.0 2,801,858 + Dsui_2648 0.13 +0.4 2,801,860 + Dsui_2648 0.13 +0.1 2,801,946 + Dsui_2648 0.20 -0.7 2,801,954 - Dsui_2648 0.21 -0.4 2,802,028 - Dsui_2648 0.26 +0.4 2,802,151 - -1.1 2,802,204 - Dsui_2648 0.40 +1.4 2,802,260 + Dsui_2648 0.44 -0.1 2,802,269 + Dsui_2648 0.45 -0.3 2,802,295 + Dsui_2648 0.47 -0.0 2,802,305 + Dsui_2648 0.48 +0.4 2,802,313 - Dsui_2648 0.49 +1.2 2,802,314 + Dsui_2648 0.49 -0.5 2,802,428 + Dsui_2648 0.58 -0.0 2,802,441 - Dsui_2648 0.59 +0.5 2,802,453 + Dsui_2648 0.60 -0.3 2,802,499 - Dsui_2648 0.63 +0.1 2,802,569 + Dsui_2648 0.69 +0.1 2,802,579 + Dsui_2648 0.69 +0.1 2,802,587 - Dsui_2648 0.70 +1.1 2,802,646 + Dsui_2648 0.75 +0.7 2,802,672 + Dsui_2648 0.77 +0.5 2,802,720 + Dsui_2648 0.80 +0.8 2,802,786 + Dsui_2648 0.85 -0.1 2,802,786 + Dsui_2648 0.85 +0.1 2,802,794 - Dsui_2648 0.86 -0.3 2,802,798 + Dsui_2648 0.86 +0.3 2,802,870 + -0.6 2,802,870 + +0.4 2,802,878 - +0.2 2,802,878 - -3.0 2,802,878 - +0.3 2,802,878 - +0.0 2,802,878 - +0.8 2,802,938 + -0.5 2,802,938 + +0.5 2,803,023 + -0.6 2,803,047 + +0.7 2,803,055 - +0.5 2,803,167 + +0.6 2,803,167 + -0.0 2,803,167 + +0.2 2,803,167 + -0.1 2,803,175 - +2.9 2,803,259 + -0.2 2,803,279 - -1.6 2,803,309 - Dsui_2649 0.11 +0.7 2,803,340 + Dsui_2649 0.12 +0.8 2,803,381 - Dsui_2649 0.13 -0.2 2,803,438 + Dsui_2649 0.15 -0.3 2,803,536 + Dsui_2649 0.19 -0.7 2,803,543 + Dsui_2649 0.19 +0.5 2,803,592 + Dsui_2649 0.20 +0.1 2,803,667 + Dsui_2649 0.23 -0.4 2,803,677 - Dsui_2649 0.23 +0.4 2,803,726 + Dsui_2649 0.25 +1.5 2,803,739 - Dsui_2649 0.25 -0.2 2,803,796 - +1.4 2,803,903 - Dsui_2649 0.31 -0.8 2,803,906 + Dsui_2649 0.31 -1.0 2,803,945 - Dsui_2649 0.32 +0.6
Or see this region's nucleotide sequence