Strain Fitness in Dechlorosoma suillum PS around Dsui_2613

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2610 and Dsui_2611 are separated by 7 nucleotidesDsui_2611 and Dsui_2612 overlap by 4 nucleotidesDsui_2612 and Dsui_2613 overlap by 4 nucleotidesDsui_2613 and Dsui_2614 are separated by 48 nucleotidesDsui_2614 and Dsui_2615 overlap by 4 nucleotides Dsui_2610: Dsui_2610 - single-stranded DNA-binding protein, at 2,764,962 to 2,765,330 _2610 Dsui_2611: Dsui_2611 - hypothetical protein, at 2,765,338 to 2,765,667 _2611 Dsui_2612: Dsui_2612 - hypothetical protein, at 2,765,664 to 2,766,197 _2612 Dsui_2613: Dsui_2613 - integrating conjugative element protein, PFL_4669 family, at 2,766,194 to 2,767,207 _2613 Dsui_2614: Dsui_2614 - hypothetical protein, at 2,767,256 to 2,768,056 _2614 Dsui_2615: Dsui_2615 - hypothetical protein, at 2,768,053 to 2,769,579 _2615 Position (kb) 2766 2767 2768Strain fitness (log2 ratio) -2 -1 0 1at 2765.195 kb on + strand, within Dsui_2610at 2765.254 kb on - strand, within Dsui_2610at 2765.425 kb on - strand, within Dsui_2611at 2765.425 kb on - strand, within Dsui_2611at 2765.425 kb on - strand, within Dsui_2611at 2765.427 kb on + strandat 2765.474 kb on - strand, within Dsui_2611at 2765.564 kb on - strand, within Dsui_2611at 2765.638 kb on - strandat 2765.638 kb on - strandat 2765.670 kb on + strandat 2765.736 kb on - strand, within Dsui_2612at 2765.792 kb on - strandat 2765.792 kb on - strand, within Dsui_2612at 2765.904 kb on - strand, within Dsui_2612at 2765.991 kb on + strand, within Dsui_2612at 2766.118 kb on + strand, within Dsui_2612at 2766.165 kb on - strandat 2766.169 kb on + strandat 2766.276 kb on + strandat 2766.415 kb on + strand, within Dsui_2613at 2766.423 kb on - strand, within Dsui_2613at 2766.423 kb on - strand, within Dsui_2613at 2766.423 kb on - strand, within Dsui_2613at 2766.512 kb on + strandat 2766.519 kb on - strand, within Dsui_2613at 2766.563 kb on - strand, within Dsui_2613at 2766.691 kb on - strand, within Dsui_2613at 2766.734 kb on - strand, within Dsui_2613at 2766.797 kb on - strand, within Dsui_2613at 2766.803 kb on - strand, within Dsui_2613at 2766.927 kb on + strand, within Dsui_2613at 2767.067 kb on + strandat 2767.144 kb on + strandat 2767.262 kb on - strandat 2767.597 kb on + strand, within Dsui_2614at 2767.597 kb on + strand, within Dsui_2614at 2767.606 kb on - strand, within Dsui_2614at 2767.716 kb on + strand, within Dsui_2614at 2767.764 kb on - strand, within Dsui_2614at 2767.948 kb on - strand, within Dsui_2614at 2767.985 kb on + strandat 2768.093 kb on + strandat 2768.185 kb on - strandat 2768.187 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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2,765,195 + Dsui_2610 0.63 -1.7
2,765,254 - Dsui_2610 0.79 -1.5
2,765,425 - Dsui_2611 0.26 +0.8
2,765,425 - Dsui_2611 0.26 +0.5
2,765,425 - Dsui_2611 0.26 +0.2
2,765,427 + +0.3
2,765,474 - Dsui_2611 0.41 -0.3
2,765,564 - Dsui_2611 0.68 -0.9
2,765,638 - -0.2
2,765,638 - -1.9
2,765,670 + -0.1
2,765,736 - Dsui_2612 0.13 +0.3
2,765,792 - +0.3
2,765,792 - Dsui_2612 0.24 -0.3
2,765,904 - Dsui_2612 0.45 -0.1
2,765,991 + Dsui_2612 0.61 +0.3
2,766,118 + Dsui_2612 0.85 +0.2
2,766,165 - +0.1
2,766,169 + -0.8
2,766,276 + -0.1
2,766,415 + Dsui_2613 0.22 +0.0
2,766,423 - Dsui_2613 0.23 -0.3
2,766,423 - Dsui_2613 0.23 -0.3
2,766,423 - Dsui_2613 0.23 -0.2
2,766,512 + +0.3
2,766,519 - Dsui_2613 0.32 -0.5
2,766,563 - Dsui_2613 0.36 +0.2
2,766,691 - Dsui_2613 0.49 +0.5
2,766,734 - Dsui_2613 0.53 -1.5
2,766,797 - Dsui_2613 0.59 -1.0
2,766,803 - Dsui_2613 0.60 -1.3
2,766,927 + Dsui_2613 0.72 -1.3
2,767,067 + -0.7
2,767,144 + -1.2
2,767,262 - -0.8
2,767,597 + Dsui_2614 0.43 -0.2
2,767,597 + Dsui_2614 0.43 +0.3
2,767,606 - Dsui_2614 0.44 -1.6
2,767,716 + Dsui_2614 0.57 -1.0
2,767,764 - Dsui_2614 0.63 +0.2
2,767,948 - Dsui_2614 0.86 +0.2
2,767,985 + +0.3
2,768,093 + -0.2
2,768,185 - -0.7
2,768,187 + -0.5

Or see this region's nucleotide sequence