Strain Fitness in Dechlorosoma suillum PS around Dsui_2482

Experiment: defined media with 40 mM sodium acetate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2480 and Dsui_2481 overlap by 4 nucleotidesDsui_2481 and Dsui_2482 are separated by 71 nucleotidesDsui_2482 and Dsui_2483 overlap by 11 nucleotidesDsui_2483 and Dsui_2484 are separated by 28 nucleotides Dsui_2480: Dsui_2480 - nitrous oxidase accessory protein, at 2,630,518 to 2,631,753 _2480 Dsui_2481: Dsui_2481 - DNA polymerase III, epsilon subunit, at 2,631,750 to 2,632,469 _2481 Dsui_2482: Dsui_2482 - ribonuclease HI, at 2,632,541 to 2,632,993 _2482 Dsui_2483: Dsui_2483 - methylase involved in ubiquinone/menaquinone biosynthesis, at 2,632,983 to 2,633,711 _2483 Dsui_2484: Dsui_2484 - hydroxyacylglutathione hydrolase, at 2,633,740 to 2,634,543 _2484 Position (kb) 2632 2633Strain fitness (log2 ratio) -1 0 1at 2631.663 kb on + strandat 2631.734 kb on - strandat 2632.499 kb on - strandat 2632.524 kb on - strandat 2632.524 kb on - strandat 2632.545 kb on - strandat 2632.975 kb on - strandat 2632.998 kb on - strandat 2633.732 kb on - strandat 2633.755 kb on - strandat 2633.758 kb on - strandat 2633.775 kb on - strandat 2633.829 kb on - strand, within Dsui_2484

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
remove
2,631,663 + +0.0
2,631,734 - +0.2
2,632,499 - +0.0
2,632,524 - +0.4
2,632,524 - +1.0
2,632,545 - +0.5
2,632,975 - -0.1
2,632,998 - -0.5
2,633,732 - +0.4
2,633,755 - +0.4
2,633,758 - -0.2
2,633,775 - +0.2
2,633,829 - Dsui_2484 0.11 +0.4

Or see this region's nucleotide sequence