Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2475 and Dsui_2476 are separated by 138 nucleotides Dsui_2476 and Dsui_2477 are separated by 70 nucleotides Dsui_2477 and Dsui_2478 are separated by 17 nucleotides Dsui_2478 and Dsui_2479 overlap by 4 nucleotides Dsui_2479 and Dsui_2480 are separated by 6 nucleotides
Dsui_2475: Dsui_2475 - tRNA-Gly, at 2,629,209 to 2,629,284
_2475
Dsui_2476: Dsui_2476 - hypothetical protein, at 2,629,423 to 2,629,626
_2476
Dsui_2477: Dsui_2477 - tRNA-Leu, at 2,629,697 to 2,629,781
_2477
Dsui_2478: Dsui_2478 - hypothetical protein, at 2,629,799 to 2,630,239
_2478
Dsui_2479: Dsui_2479 - hypothetical protein, at 2,630,236 to 2,630,511
_2479
Dsui_2480: Dsui_2480 - nitrous oxidase accessory protein, at 2,630,518 to 2,631,753
_2480
Position (kb)
2630
2631 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2629.328 kb on + strand at 2629.394 kb on - strand at 2629.490 kb on + strand, within Dsui_2476 at 2629.653 kb on + strand at 2629.779 kb on + strand at 2629.814 kb on - strand at 2629.818 kb on + strand at 2629.852 kb on - strand, within Dsui_2478 at 2629.888 kb on - strand, within Dsui_2478 at 2629.902 kb on - strand, within Dsui_2478 at 2629.907 kb on - strand, within Dsui_2478 at 2629.944 kb on + strand, within Dsui_2478 at 2629.955 kb on + strand, within Dsui_2478 at 2630.021 kb on - strand, within Dsui_2478 at 2630.228 kb on + strand at 2630.253 kb on + strand at 2630.267 kb on - strand at 2630.293 kb on + strand, within Dsui_2479 at 2630.431 kb on - strand, within Dsui_2479 at 2630.446 kb on - strand, within Dsui_2479 at 2630.481 kb on + strand, within Dsui_2479 at 2630.505 kb on + strand at 2630.505 kb on + strand at 2630.513 kb on - strand at 2630.573 kb on - strand at 2630.665 kb on - strand, within Dsui_2480 at 2630.702 kb on + strand, within Dsui_2480 at 2630.746 kb on + strand, within Dsui_2480 at 2630.749 kb on - strand, within Dsui_2480 at 2630.792 kb on + strand, within Dsui_2480 at 2630.799 kb on - strand, within Dsui_2480 at 2630.884 kb on + strand at 2631.108 kb on - strand, within Dsui_2480 at 2631.293 kb on - strand, within Dsui_2480 at 2631.381 kb on + strand at 2631.415 kb on + strand, within Dsui_2480 at 2631.428 kb on - strand, within Dsui_2480 at 2631.493 kb on - strand, within Dsui_2480
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 2,629,328 + +0.4 2,629,394 - +0.6 2,629,490 + Dsui_2476 0.33 -0.7 2,629,653 + +0.0 2,629,779 + +0.9 2,629,814 - +0.2 2,629,818 + +0.4 2,629,852 - Dsui_2478 0.12 +0.4 2,629,888 - Dsui_2478 0.20 -0.0 2,629,902 - Dsui_2478 0.23 +0.6 2,629,907 - Dsui_2478 0.24 +1.1 2,629,944 + Dsui_2478 0.33 +0.5 2,629,955 + Dsui_2478 0.35 -0.6 2,630,021 - Dsui_2478 0.50 +0.1 2,630,228 + +0.5 2,630,253 + +1.0 2,630,267 - +1.7 2,630,293 + Dsui_2479 0.21 +0.8 2,630,431 - Dsui_2479 0.71 +0.8 2,630,446 - Dsui_2479 0.76 +0.2 2,630,481 + Dsui_2479 0.89 +0.7 2,630,505 + +0.4 2,630,505 + +1.7 2,630,513 - +0.2 2,630,573 - +0.2 2,630,665 - Dsui_2480 0.12 +0.1 2,630,702 + Dsui_2480 0.15 +0.7 2,630,746 + Dsui_2480 0.18 +0.0 2,630,749 - Dsui_2480 0.19 +0.4 2,630,792 + Dsui_2480 0.22 -0.8 2,630,799 - Dsui_2480 0.23 +0.4 2,630,884 + +3.2 2,631,108 - Dsui_2480 0.48 +0.4 2,631,293 - Dsui_2480 0.63 +0.4 2,631,381 + +0.2 2,631,415 + Dsui_2480 0.73 -2.0 2,631,428 - Dsui_2480 0.74 +0.1 2,631,493 - Dsui_2480 0.79 -0.7
Or see this region's nucleotide sequence