Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2072 and Dsui_2073 are separated by 153 nucleotides Dsui_2073 and Dsui_2074 are separated by 218 nucleotides Dsui_2074 and Dsui_2075 are separated by 647 nucleotides
Dsui_2072: Dsui_2072 - Pirin-related protein, at 2,190,781 to 2,191,698
_2072
Dsui_2073: Dsui_2073 - Uncharacterized protein conserved in bacteria (DUF2242), at 2,191,852 to 2,192,358
_2073
Dsui_2074: Dsui_2074 - phasin family protein, at 2,192,577 to 2,192,972
_2074
Dsui_2075: Dsui_2075 - nucleotidyltransferase/DNA polymerase involved in DNA repair, at 2,193,620 to 2,194,783
_2075
Position (kb)
2192
2193 Strain fitness (log2 ratio)
-1
0
1
2 at 2191.599 kb on + strand, within Dsui_2072 at 2191.619 kb on + strand at 2191.780 kb on + strand at 2192.118 kb on + strand at 2192.212 kb on + strand at 2192.439 kb on + strand at 2192.525 kb on + strand at 2192.651 kb on + strand at 2192.676 kb on + strand, within Dsui_2074 at 2192.822 kb on + strand at 2192.841 kb on - strand, within Dsui_2074 at 2192.862 kb on - strand, within Dsui_2074 at 2192.862 kb on - strand, within Dsui_2074 at 2192.909 kb on + strand, within Dsui_2074 at 2192.909 kb on + strand at 2192.909 kb on + strand at 2192.917 kb on - strand, within Dsui_2074 at 2192.917 kb on - strand, within Dsui_2074 at 2192.917 kb on - strand, within Dsui_2074 at 2192.948 kb on + strand at 2192.955 kb on + strand at 2193.000 kb on - strand at 2193.022 kb on - strand at 2193.039 kb on + strand at 2193.278 kb on + strand at 2193.286 kb on - strand at 2193.286 kb on - strand at 2193.543 kb on + strand at 2193.651 kb on + strand at 2193.702 kb on + strand at 2193.710 kb on - strand at 2193.767 kb on + strand, within Dsui_2075 at 2193.831 kb on + strand, within Dsui_2075 at 2193.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 2,191,599 + Dsui_2072 0.89 +0.1 2,191,619 + +0.0 2,191,780 + +2.2 2,192,118 + +2.2 2,192,212 + +1.2 2,192,439 + +2.2 2,192,525 + -0.8 2,192,651 + +0.6 2,192,676 + Dsui_2074 0.25 +0.2 2,192,822 + +0.6 2,192,841 - Dsui_2074 0.67 -1.0 2,192,862 - Dsui_2074 0.72 +0.4 2,192,862 - Dsui_2074 0.72 +0.6 2,192,909 + Dsui_2074 0.84 -1.5 2,192,909 + +1.2 2,192,909 + +0.2 2,192,917 - Dsui_2074 0.86 +0.2 2,192,917 - Dsui_2074 0.86 +2.2 2,192,917 - Dsui_2074 0.86 +1.8 2,192,948 + +0.2 2,192,955 + +1.2 2,193,000 - -0.8 2,193,022 - +0.5 2,193,039 + +2.2 2,193,278 + +2.2 2,193,286 - +0.6 2,193,286 - +1.2 2,193,543 + +1.3 2,193,651 + -0.7 2,193,702 + -0.9 2,193,710 - +0.2 2,193,767 + Dsui_2075 0.13 -0.2 2,193,831 + Dsui_2075 0.18 +0.6 2,193,963 - +1.6
Or see this region's nucleotide sequence