Strain Fitness in Dechlorosoma suillum PS around Dsui_1883

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1881 and Dsui_1882 are separated by 62 nucleotidesDsui_1882 and Dsui_1883 are separated by 103 nucleotidesDsui_1883 and Dsui_1884 are separated by 0 nucleotides Dsui_1881: Dsui_1881 - methyl-accepting chemotaxis protein, at 1,978,041 to 1,980,077 _1881 Dsui_1882: Dsui_1882 - hypothetical protein, at 1,980,140 to 1,980,637 _1882 Dsui_1883: Dsui_1883 - ATPase component of ABC transporters with duplicated ATPase domain, at 1,980,741 to 1,982,663 _1883 Dsui_1884: Dsui_1884 - histidine kinase, at 1,982,664 to 1,983,827 _1884 Position (kb) 1980 1981 1982 1983Strain fitness (log2 ratio) -1 0 1 2at 1979.782 kb on + strand, within Dsui_1881at 1979.790 kb on - strand, within Dsui_1881at 1979.897 kb on - strandat 1979.911 kb on + strandat 1979.919 kb on - strandat 1979.984 kb on - strandat 1980.000 kb on - strandat 1980.032 kb on - strandat 1980.062 kb on - strandat 1980.174 kb on - strandat 1980.268 kb on + strand, within Dsui_1882at 1980.302 kb on + strand, within Dsui_1882at 1980.305 kb on - strand, within Dsui_1882at 1980.404 kb on - strand, within Dsui_1882at 1980.585 kb on + strand, within Dsui_1882at 1980.585 kb on + strand, within Dsui_1882at 1980.647 kb on - strandat 1980.702 kb on + strandat 1980.883 kb on - strandat 1980.889 kb on - strandat 1980.973 kb on + strand, within Dsui_1883at 1981.021 kb on + strand, within Dsui_1883at 1981.021 kb on + strand, within Dsui_1883at 1981.120 kb on - strand, within Dsui_1883at 1981.147 kb on - strand, within Dsui_1883at 1981.160 kb on + strand, within Dsui_1883at 1981.362 kb on - strand, within Dsui_1883at 1981.362 kb on - strand, within Dsui_1883at 1981.556 kb on - strand, within Dsui_1883at 1981.885 kb on + strand, within Dsui_1883at 1981.896 kb on - strandat 1981.921 kb on - strandat 1981.965 kb on + strand, within Dsui_1883at 1982.086 kb on + strand, within Dsui_1883at 1982.178 kb on - strand, within Dsui_1883at 1982.178 kb on - strand, within Dsui_1883at 1982.212 kb on + strand, within Dsui_1883at 1982.380 kb on - strand, within Dsui_1883at 1982.454 kb on - strandat 1982.500 kb on + strandat 1982.568 kb on + strandat 1982.568 kb on + strandat 1982.576 kb on - strandat 1982.849 kb on - strand, within Dsui_1884at 1983.040 kb on - strand, within Dsui_1884at 1983.136 kb on + strand, within Dsui_1884at 1983.293 kb on + strandat 1983.421 kb on + strand, within Dsui_1884at 1983.435 kb on - strand, within Dsui_1884at 1983.634 kb on - strand, within Dsui_1884

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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1,979,782 + Dsui_1881 0.85 +1.2
1,979,790 - Dsui_1881 0.86 +0.2
1,979,897 - -0.2
1,979,911 + +1.7
1,979,919 - -0.1
1,979,984 - -0.2
1,980,000 - -0.2
1,980,032 - -0.8
1,980,062 - +0.3
1,980,174 - +0.2
1,980,268 + Dsui_1882 0.26 +0.2
1,980,302 + Dsui_1882 0.33 +0.9
1,980,305 - Dsui_1882 0.33 -1.2
1,980,404 - Dsui_1882 0.53 -0.6
1,980,585 + Dsui_1882 0.89 -0.7
1,980,585 + Dsui_1882 0.89 -0.5
1,980,647 - -0.1
1,980,702 + +1.6
1,980,883 - -0.2
1,980,889 - +2.2
1,980,973 + Dsui_1883 0.12 -0.3
1,981,021 + Dsui_1883 0.15 -0.8
1,981,021 + Dsui_1883 0.15 +0.9
1,981,120 - Dsui_1883 0.20 +1.0
1,981,147 - Dsui_1883 0.21 +1.2
1,981,160 + Dsui_1883 0.22 +0.5
1,981,362 - Dsui_1883 0.32 -1.3
1,981,362 - Dsui_1883 0.32 +0.6
1,981,556 - Dsui_1883 0.42 +0.7
1,981,885 + Dsui_1883 0.59 -1.3
1,981,896 - +0.9
1,981,921 - +1.6
1,981,965 + Dsui_1883 0.64 +0.3
1,982,086 + Dsui_1883 0.70 +1.0
1,982,178 - Dsui_1883 0.75 -0.1
1,982,178 - Dsui_1883 0.75 +0.6
1,982,212 + Dsui_1883 0.76 +0.7
1,982,380 - Dsui_1883 0.85 +0.3
1,982,454 - +1.8
1,982,500 + -0.1
1,982,568 + -0.2
1,982,568 + +0.5
1,982,576 - +0.3
1,982,849 - Dsui_1884 0.16 +0.8
1,983,040 - Dsui_1884 0.32 +0.5
1,983,136 + Dsui_1884 0.41 -0.1
1,983,293 + +1.6
1,983,421 + Dsui_1884 0.65 -0.0
1,983,435 - Dsui_1884 0.66 -0.5
1,983,634 - Dsui_1884 0.83 -0.4

Or see this region's nucleotide sequence