Strain Fitness in Dechlorosoma suillum PS around Dsui_1661

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1660 and Dsui_1661 overlap by 1 nucleotidesDsui_1661 and Dsui_1662 are separated by 119 nucleotides Dsui_1660: Dsui_1660 - outer membrane cobalamin receptor protein, at 1,743,236 to 1,745,314 _1660 Dsui_1661: Dsui_1661 - hypothetical protein, at 1,745,314 to 1,745,790 _1661 Dsui_1662: Dsui_1662 - Oxidoreductase NAD-binding domain/Flavodoxin, at 1,745,910 to 1,747,262 _1662 Position (kb) 1745 1746Strain fitness (log2 ratio) -1 0 1 2at 1744.358 kb on - strand, within Dsui_1660at 1744.417 kb on + strand, within Dsui_1660at 1744.490 kb on + strand, within Dsui_1660at 1744.498 kb on - strand, within Dsui_1660at 1744.526 kb on + strandat 1744.606 kb on + strand, within Dsui_1660at 1744.766 kb on - strand, within Dsui_1660at 1745.037 kb on + strand, within Dsui_1660at 1745.173 kb on - strandat 1745.213 kb on + strandat 1745.327 kb on + strandat 1745.335 kb on - strandat 1745.346 kb on - strandat 1745.377 kb on + strand, within Dsui_1661at 1745.481 kb on - strandat 1745.493 kb on - strand, within Dsui_1661at 1745.532 kb on + strand, within Dsui_1661at 1745.563 kb on - strand, within Dsui_1661at 1745.574 kb on + strand, within Dsui_1661at 1745.574 kb on - strand, within Dsui_1661at 1745.594 kb on + strand, within Dsui_1661at 1745.599 kb on + strandat 1745.602 kb on - strandat 1745.641 kb on - strand, within Dsui_1661at 1745.829 kb on - strandat 1745.829 kb on - strandat 1745.839 kb on + strandat 1745.909 kb on - strandat 1745.952 kb on + strandat 1745.960 kb on - strandat 1745.986 kb on - strandat 1746.057 kb on + strand, within Dsui_1662at 1746.088 kb on - strand, within Dsui_1662at 1746.134 kb on + strand, within Dsui_1662at 1746.267 kb on - strand, within Dsui_1662at 1746.271 kb on + strand, within Dsui_1662at 1746.308 kb on + strandat 1746.436 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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1,744,358 - Dsui_1660 0.54 +0.2
1,744,417 + Dsui_1660 0.57 -0.5
1,744,490 + Dsui_1660 0.60 +1.1
1,744,498 - Dsui_1660 0.61 -0.2
1,744,526 + +2.1
1,744,606 + Dsui_1660 0.66 +0.2
1,744,766 - Dsui_1660 0.74 +0.7
1,745,037 + Dsui_1660 0.87 +0.7
1,745,173 - -0.5
1,745,213 + +0.8
1,745,327 + +0.5
1,745,335 - +0.7
1,745,346 - +2.1
1,745,377 + Dsui_1661 0.13 -0.1
1,745,481 - +0.1
1,745,493 - Dsui_1661 0.38 -0.4
1,745,532 + Dsui_1661 0.46 +0.9
1,745,563 - Dsui_1661 0.52 +0.6
1,745,574 + Dsui_1661 0.55 +0.6
1,745,574 - Dsui_1661 0.55 -0.4
1,745,594 + Dsui_1661 0.59 +0.4
1,745,599 + +0.5
1,745,602 - +1.1
1,745,641 - Dsui_1661 0.69 +0.9
1,745,829 - +0.2
1,745,829 - +0.8
1,745,839 + -0.6
1,745,909 - -0.1
1,745,952 + +1.4
1,745,960 - -0.7
1,745,986 - -0.5
1,746,057 + Dsui_1662 0.11 -0.1
1,746,088 - Dsui_1662 0.13 +1.1
1,746,134 + Dsui_1662 0.17 -0.5
1,746,267 - Dsui_1662 0.26 +2.3
1,746,271 + Dsui_1662 0.27 +0.1
1,746,308 + +2.1
1,746,436 + +1.5

Or see this region's nucleotide sequence