Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1315 and Dsui_1316 are separated by 30 nucleotides Dsui_1316 and Dsui_1317 overlap by 22 nucleotides Dsui_1317 and Dsui_1318 are separated by 98 nucleotides
Dsui_1315: Dsui_1315 - aspartyl-tRNA synthetase, at 1,373,574 to 1,375,373
_1315
Dsui_1316: Dsui_1316 - hypothetical protein, at 1,375,404 to 1,376,045
_1316
Dsui_1317: Dsui_1317 - putative regulatory protein, FmdB family, at 1,376,024 to 1,376,296
_1317
Dsui_1318: Dsui_1318 - prepilin signal peptidase PulO-like peptidase, at 1,376,395 to 1,377,249
_1318
Position (kb)
1375
1376
1377 Strain fitness (log2 ratio)
-1
0
1 at 1375.453 kb on - strand at 1375.480 kb on - strand, within Dsui_1316 at 1375.481 kb on - strand, within Dsui_1316 at 1375.678 kb on - strand, within Dsui_1316 at 1375.720 kb on - strand, within Dsui_1316 at 1375.956 kb on - strand, within Dsui_1316 at 1376.156 kb on - strand, within Dsui_1317 at 1376.339 kb on + strand at 1376.339 kb on + strand at 1376.339 kb on + strand at 1376.339 kb on + strand at 1376.339 kb on + strand at 1376.339 kb on + strand at 1376.347 kb on - strand at 1376.347 kb on - strand at 1376.347 kb on - strand at 1376.347 kb on - strand at 1376.347 kb on - strand at 1376.349 kb on + strand at 1376.401 kb on - strand at 1376.421 kb on - strand at 1376.432 kb on + strand at 1376.437 kb on + strand at 1376.537 kb on + strand, within Dsui_1318 at 1376.549 kb on - strand, within Dsui_1318 at 1376.564 kb on + strand, within Dsui_1318 at 1376.571 kb on - strand, within Dsui_1318 at 1376.637 kb on - strand, within Dsui_1318 at 1376.682 kb on + strand, within Dsui_1318 at 1376.720 kb on - strand, within Dsui_1318 at 1376.770 kb on - strand, within Dsui_1318 at 1376.780 kb on - strand, within Dsui_1318 at 1376.840 kb on - strand, within Dsui_1318 at 1376.905 kb on + strand, within Dsui_1318 at 1376.992 kb on + strand, within Dsui_1318
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 1,375,453 - +1.0 1,375,480 - Dsui_1316 0.12 -1.0 1,375,481 - Dsui_1316 0.12 -0.3 1,375,678 - Dsui_1316 0.43 -0.7 1,375,720 - Dsui_1316 0.49 -0.2 1,375,956 - Dsui_1316 0.86 -0.9 1,376,156 - Dsui_1317 0.48 -1.6 1,376,339 + -1.1 1,376,339 + -0.1 1,376,339 + -0.7 1,376,339 + -0.3 1,376,339 + +0.9 1,376,339 + -0.6 1,376,347 - -0.4 1,376,347 - -0.1 1,376,347 - -0.2 1,376,347 - +0.1 1,376,347 - -0.3 1,376,349 + -0.5 1,376,401 - -0.3 1,376,421 - -0.6 1,376,432 + -0.4 1,376,437 + -0.7 1,376,537 + Dsui_1318 0.17 -0.8 1,376,549 - Dsui_1318 0.18 +0.1 1,376,564 + Dsui_1318 0.20 -0.0 1,376,571 - Dsui_1318 0.21 -0.9 1,376,637 - Dsui_1318 0.28 +0.0 1,376,682 + Dsui_1318 0.34 +0.3 1,376,720 - Dsui_1318 0.38 -1.0 1,376,770 - Dsui_1318 0.44 +0.4 1,376,780 - Dsui_1318 0.45 -0.4 1,376,840 - Dsui_1318 0.52 +0.1 1,376,905 + Dsui_1318 0.60 -0.4 1,376,992 + Dsui_1318 0.70 -0.6
Or see this region's nucleotide sequence