Strain Fitness in Dechlorosoma suillum PS around Dsui_1148

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1147 and Dsui_1148 are separated by 10 nucleotidesDsui_1148 and Dsui_1149 are separated by 178 nucleotides Dsui_1147: Dsui_1147 - PAS domain S-box, at 1,202,101 to 1,203,474 _1147 Dsui_1148: Dsui_1148 - putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain, at 1,203,485 to 1,203,973 _1148 Dsui_1149: Dsui_1149 - Zn-dependent protease with chaperone function, at 1,204,152 to 1,205,033 _1149 Position (kb) 1203 1204Strain fitness (log2 ratio) -1 0 1 2at 1202.656 kb on - strand, within Dsui_1147at 1202.728 kb on + strand, within Dsui_1147at 1202.728 kb on + strand, within Dsui_1147at 1202.736 kb on - strand, within Dsui_1147at 1202.796 kb on + strand, within Dsui_1147at 1202.810 kb on + strand, within Dsui_1147at 1202.904 kb on - strand, within Dsui_1147at 1203.203 kb on + strand, within Dsui_1147at 1203.295 kb on + strandat 1203.302 kb on - strand, within Dsui_1147at 1203.313 kb on - strand, within Dsui_1147at 1203.315 kb on + strand, within Dsui_1147at 1203.346 kb on + strandat 1203.630 kb on + strand, within Dsui_1148at 1203.650 kb on - strand, within Dsui_1148at 1203.846 kb on - strand, within Dsui_1148at 1203.890 kb on - strand, within Dsui_1148at 1204.109 kb on + strandat 1204.427 kb on + strand, within Dsui_1149at 1204.435 kb on - strand, within Dsui_1149at 1204.447 kb on - strand, within Dsui_1149at 1204.561 kb on - strand, within Dsui_1149at 1204.605 kb on + strand, within Dsui_1149at 1204.622 kb on + strand, within Dsui_1149at 1204.820 kb on + strand, within Dsui_1149at 1204.859 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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1,202,656 - Dsui_1147 0.40 +0.4
1,202,728 + Dsui_1147 0.46 -0.0
1,202,728 + Dsui_1147 0.46 -0.0
1,202,736 - Dsui_1147 0.46 +0.2
1,202,796 + Dsui_1147 0.51 -0.0
1,202,810 + Dsui_1147 0.52 +0.5
1,202,904 - Dsui_1147 0.58 -0.2
1,203,203 + Dsui_1147 0.80 -0.8
1,203,295 + +2.1
1,203,302 - Dsui_1147 0.87 +0.2
1,203,313 - Dsui_1147 0.88 -0.4
1,203,315 + Dsui_1147 0.88 +0.2
1,203,346 + +1.5
1,203,630 + Dsui_1148 0.30 +0.9
1,203,650 - Dsui_1148 0.34 +0.1
1,203,846 - Dsui_1148 0.74 +0.2
1,203,890 - Dsui_1148 0.83 -0.1
1,204,109 + +1.1
1,204,427 + Dsui_1149 0.31 -1.7
1,204,435 - Dsui_1149 0.32 +1.1
1,204,447 - Dsui_1149 0.33 -0.3
1,204,561 - Dsui_1149 0.46 +0.2
1,204,605 + Dsui_1149 0.51 +1.8
1,204,622 + Dsui_1149 0.53 +0.8
1,204,820 + Dsui_1149 0.76 +0.5
1,204,859 + +2.1

Or see this region's nucleotide sequence