Strain Fitness in Dechlorosoma suillum PS around Dsui_1120

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1118 and Dsui_1119 are separated by 47 nucleotidesDsui_1119 and Dsui_1120 overlap by 4 nucleotidesDsui_1120 and Dsui_1121 are separated by 101 nucleotides Dsui_1118: Dsui_1118 - putative permease, at 1,166,050 to 1,166,946 _1118 Dsui_1119: Dsui_1119 - glutathione peroxidase, at 1,166,994 to 1,167,482 _1119 Dsui_1120: Dsui_1120 - uncharacterized protein SCO1/SenC/PrrC, at 1,167,479 to 1,168,063 _1120 Dsui_1121: Dsui_1121 - alternative sigma factor RpoH, at 1,168,165 to 1,169,022 _1121 Position (kb) 1167 1168 1169Strain fitness (log2 ratio) -1 0 1at 1166.524 kb on + strand, within Dsui_1118at 1166.532 kb on - strand, within Dsui_1118at 1166.532 kb on - strand, within Dsui_1118at 1166.532 kb on - strand, within Dsui_1118at 1166.543 kb on + strand, within Dsui_1118at 1166.832 kb on + strand, within Dsui_1118at 1166.832 kb on + strand, within Dsui_1118at 1166.840 kb on - strand, within Dsui_1118at 1166.977 kb on + strandat 1167.168 kb on + strand, within Dsui_1119at 1167.325 kb on + strand, within Dsui_1119at 1167.327 kb on - strand, within Dsui_1119at 1167.408 kb on - strand, within Dsui_1119at 1167.493 kb on + strandat 1167.508 kb on + strandat 1167.731 kb on + strand, within Dsui_1120at 1167.732 kb on + strand, within Dsui_1120at 1167.795 kb on + strand, within Dsui_1120at 1167.855 kb on - strand, within Dsui_1120at 1167.931 kb on + strand, within Dsui_1120at 1167.939 kb on - strand, within Dsui_1120at 1168.010 kb on + strandat 1169.005 kb on + strandat 1169.013 kb on - strandat 1169.034 kb on + strandat 1169.055 kb on + strandat 1169.063 kb on - strandat 1169.063 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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1,166,524 + Dsui_1118 0.53 -0.2
1,166,532 - Dsui_1118 0.54 +0.0
1,166,532 - Dsui_1118 0.54 +0.2
1,166,532 - Dsui_1118 0.54 +0.3
1,166,543 + Dsui_1118 0.55 +1.0
1,166,832 + Dsui_1118 0.87 +0.1
1,166,832 + Dsui_1118 0.87 -0.3
1,166,840 - Dsui_1118 0.88 +0.2
1,166,977 + -0.2
1,167,168 + Dsui_1119 0.36 -0.3
1,167,325 + Dsui_1119 0.68 +0.1
1,167,327 - Dsui_1119 0.68 +1.2
1,167,408 - Dsui_1119 0.85 -0.4
1,167,493 + -0.1
1,167,508 + -0.6
1,167,731 + Dsui_1120 0.43 -0.3
1,167,732 + Dsui_1120 0.43 +0.3
1,167,795 + Dsui_1120 0.54 +1.5
1,167,855 - Dsui_1120 0.64 +0.4
1,167,931 + Dsui_1120 0.77 +0.6
1,167,939 - Dsui_1120 0.79 +0.6
1,168,010 + -0.4
1,169,005 + -0.5
1,169,013 - +0.3
1,169,034 + -0.5
1,169,055 + +0.6
1,169,063 - +0.0
1,169,063 - +0.9

Or see this region's nucleotide sequence