Strain Fitness in Dechlorosoma suillum PS around Dsui_0857

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0855 and Dsui_0856 are separated by 18 nucleotidesDsui_0856 and Dsui_0857 are separated by 28 nucleotidesDsui_0857 and Dsui_0858 are separated by 57 nucleotidesDsui_0858 and Dsui_0859 are separated by 83 nucleotides Dsui_0855: Dsui_0855 - proton translocating ATP synthase, F1 alpha subunit, at 870,272 to 871,810 _0855 Dsui_0856: Dsui_0856 - ATP synthase, F1 gamma subunit, at 871,829 to 872,692 _0856 Dsui_0857: Dsui_0857 - ATP synthase, F1 beta subunit, at 872,721 to 874,124 _0857 Dsui_0858: Dsui_0858 - ATP synthase, F1 epsilon subunit, at 874,182 to 874,604 _0858 Dsui_0859: Dsui_0859 - hypothetical protein, at 874,688 to 875,263 _0859 Position (kb) 872 873 874 875Strain fitness (log2 ratio) -1 0 1 2at 874.853 kb on - strand, within Dsui_0859at 874.923 kb on + strandat 875.033 kb on - strand, within Dsui_0859

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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874,853 - Dsui_0859 0.29 -1.6
874,923 + +2.1
875,033 - Dsui_0859 0.60 -0.0

Or see this region's nucleotide sequence