Strain Fitness in Dechlorosoma suillum PS around Dsui_0126

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0124 and Dsui_0125 are separated by 4 nucleotidesDsui_0125 and Dsui_0126 are separated by 108 nucleotidesDsui_0126 and Dsui_0127 are separated by 160 nucleotides Dsui_0124: Dsui_0124 - lactate dehydrogenase-like oxidoreductase, at 121,634 to 122,602 _0124 Dsui_0125: Dsui_0125 - NAD-dependent aldehyde dehydrogenase, at 122,607 to 123,344 _0125 Dsui_0126: Dsui_0126 - (4Fe-4S) cluster-containing protein, at 123,453 to 124,892 _0126 Dsui_0127: Dsui_0127 - transcriptional regulator, at 125,053 to 125,886 _0127 Position (kb) 123 124 125Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 122.519 kb on - strandat 122.526 kb on + strandat 122.534 kb on - strandat 122.605 kb on + strandat 122.655 kb on - strandat 122.675 kb on - strandat 122.872 kb on - strand, within Dsui_0125at 122.896 kb on + strandat 123.218 kb on + strandat 123.241 kb on - strand, within Dsui_0125at 123.272 kb on - strandat 123.282 kb on - strandat 123.287 kb on - strandat 123.315 kb on + strandat 123.317 kb on - strandat 123.331 kb on + strandat 123.360 kb on - strandat 123.395 kb on - strandat 123.427 kb on + strandat 123.446 kb on - strandat 123.451 kb on + strandat 123.459 kb on - strandat 123.493 kb on + strandat 123.655 kb on - strand, within Dsui_0126at 123.682 kb on - strand, within Dsui_0126at 123.697 kb on - strand, within Dsui_0126at 123.770 kb on - strand, within Dsui_0126at 123.827 kb on - strand, within Dsui_0126at 123.828 kb on - strand, within Dsui_0126at 123.839 kb on - strand, within Dsui_0126at 123.869 kb on - strand, within Dsui_0126at 123.899 kb on - strand, within Dsui_0126at 124.007 kb on + strand, within Dsui_0126at 124.007 kb on + strandat 124.035 kb on - strand, within Dsui_0126at 124.035 kb on - strand, within Dsui_0126at 124.092 kb on + strand, within Dsui_0126at 124.111 kb on + strandat 124.127 kb on + strand, within Dsui_0126at 124.220 kb on - strand, within Dsui_0126at 124.276 kb on + strand, within Dsui_0126at 124.286 kb on - strandat 124.322 kb on - strand, within Dsui_0126at 124.332 kb on + strandat 124.348 kb on - strand, within Dsui_0126at 124.396 kb on - strand, within Dsui_0126at 124.396 kb on - strand, within Dsui_0126at 124.533 kb on - strand, within Dsui_0126at 124.543 kb on - strand, within Dsui_0126at 124.567 kb on - strand, within Dsui_0126at 124.740 kb on - strand, within Dsui_0126at 124.759 kb on - strandat 124.781 kb on + strandat 124.785 kb on - strandat 124.828 kb on - strandat 124.848 kb on + strandat 124.900 kb on + strandat 124.900 kb on + strandat 124.900 kb on + strandat 124.900 kb on + strandat 124.900 kb on + strandat 124.900 kb on + strandat 124.900 kb on + strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.910 kb on + strandat 125.014 kb on - strandat 125.072 kb on + strandat 125.080 kb on - strandat 125.135 kb on + strandat 125.204 kb on + strand, within Dsui_0127at 125.204 kb on + strand, within Dsui_0127at 125.204 kb on + strand, within Dsui_0127at 125.212 kb on - strand, within Dsui_0127at 125.217 kb on + strand, within Dsui_0127at 125.217 kb on + strand, within Dsui_0127at 125.240 kb on - strand, within Dsui_0127at 125.266 kb on + strand, within Dsui_0127at 125.309 kb on + strand, within Dsui_0127at 125.383 kb on - strand, within Dsui_0127at 125.388 kb on - strand, within Dsui_0127at 125.399 kb on - strand, within Dsui_0127at 125.411 kb on + strand, within Dsui_0127at 125.429 kb on + strand, within Dsui_0127at 125.482 kb on - strand, within Dsui_0127at 125.514 kb on + strand, within Dsui_0127at 125.536 kb on - strand, within Dsui_0127at 125.541 kb on - strand, within Dsui_0127at 125.556 kb on + strand, within Dsui_0127at 125.556 kb on + strand, within Dsui_0127at 125.564 kb on - strand, within Dsui_0127at 125.816 kb on + strandat 125.837 kb on + strandat 125.857 kb on + strandat 125.857 kb on + strandat 125.858 kb on - strandat 125.862 kb on + strandat 125.875 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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122,519 - -0.3
122,526 + -0.1
122,534 - +1.2
122,605 + +0.6
122,655 - +0.3
122,675 - +0.0
122,872 - Dsui_0125 0.36 -0.5
122,896 + +0.6
123,218 + +2.2
123,241 - Dsui_0125 0.86 +0.2
123,272 - -0.6
123,282 - +0.6
123,287 - -0.5
123,315 + +1.2
123,317 - -1.3
123,331 + -0.4
123,360 - +0.1
123,395 - -0.1
123,427 + +0.6
123,446 - -0.1
123,451 + -0.4
123,459 - -0.7
123,493 + +1.1
123,655 - Dsui_0126 0.14 -0.4
123,682 - Dsui_0126 0.16 -0.4
123,697 - Dsui_0126 0.17 -1.8
123,770 - Dsui_0126 0.22 -0.3
123,827 - Dsui_0126 0.26 -0.5
123,828 - Dsui_0126 0.26 -0.1
123,839 - Dsui_0126 0.27 +0.9
123,869 - Dsui_0126 0.29 -0.1
123,899 - Dsui_0126 0.31 -0.2
124,007 + Dsui_0126 0.38 -1.6
124,007 + -0.6
124,035 - Dsui_0126 0.40 -0.8
124,035 - Dsui_0126 0.40 -0.2
124,092 + Dsui_0126 0.44 -0.4
124,111 + -0.4
124,127 + Dsui_0126 0.47 -1.4
124,220 - Dsui_0126 0.53 -0.5
124,276 + Dsui_0126 0.57 +0.6
124,286 - +1.2
124,322 - Dsui_0126 0.60 +0.7
124,332 + +1.6
124,348 - Dsui_0126 0.62 +0.1
124,396 - Dsui_0126 0.65 +0.5
124,396 - Dsui_0126 0.65 +0.7
124,533 - Dsui_0126 0.75 +0.4
124,543 - Dsui_0126 0.76 +0.7
124,567 - Dsui_0126 0.77 +0.5
124,740 - Dsui_0126 0.89 -0.1
124,759 - -0.5
124,781 + +0.0
124,785 - +0.2
124,828 - -0.4
124,848 + -0.4
124,900 + +0.0
124,900 + -0.4
124,900 + -2.2
124,900 + +1.2
124,900 + -0.3
124,900 + +0.8
124,900 + +0.8
124,908 - +0.2
124,908 - -1.3
124,908 - -0.5
124,908 - -0.0
124,908 - +0.7
124,908 - -0.1
124,908 - -0.3
124,908 - +1.0
124,908 - -0.5
124,910 + -1.1
125,014 - +0.2
125,072 + -1.7
125,080 - +0.6
125,135 + -2.3
125,204 + Dsui_0127 0.18 -5.0
125,204 + Dsui_0127 0.18 -3.3
125,204 + Dsui_0127 0.18 -1.0
125,212 - Dsui_0127 0.19 -1.9
125,217 + Dsui_0127 0.20 -2.0
125,217 + Dsui_0127 0.20 -2.7
125,240 - Dsui_0127 0.22 -2.4
125,266 + Dsui_0127 0.26 -1.4
125,309 + Dsui_0127 0.31 +0.2
125,383 - Dsui_0127 0.40 -1.9
125,388 - Dsui_0127 0.40 -1.4
125,399 - Dsui_0127 0.41 -0.6
125,411 + Dsui_0127 0.43 -1.1
125,429 + Dsui_0127 0.45 -0.6
125,482 - Dsui_0127 0.51 -2.1
125,514 + Dsui_0127 0.55 -2.0
125,536 - Dsui_0127 0.58 -1.0
125,541 - Dsui_0127 0.59 -2.2
125,556 + Dsui_0127 0.60 -1.4
125,556 + Dsui_0127 0.60 -2.4
125,564 - Dsui_0127 0.61 -1.6
125,816 + -3.1
125,837 + -4.1
125,857 + -3.7
125,857 + -1.5
125,858 - -2.4
125,862 + -0.0
125,875 - -0.5

Or see this region's nucleotide sequence