Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0019 and Dsui_0020 are separated by 110 nucleotides Dsui_0020 and Dsui_0021 overlap by 8 nucleotides Dsui_0021 and Dsui_0022 are separated by 109 nucleotides
Dsui_0019: Dsui_0019 - malate synthase A, at 16,558 to 18,156
_0019
Dsui_0020: Dsui_0020 - HAD-superfamily subfamily IIA hydrolase, TIGR01458, at 18,267 to 19,067
_0020
Dsui_0021: Dsui_0021 - putative metalloendopeptidase, at 19,060 to 19,293
_0021
Dsui_0022: Dsui_0022 - hypothetical protein, at 19,403 to 20,341
_0022
Position (kb) 18
19
20 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 17.276 kb on + strand, within Dsui_0019 at 17.284 kb on - strand, within Dsui_0019 at 17.303 kb on - strand, within Dsui_0019 at 17.336 kb on + strand, within Dsui_0019 at 17.432 kb on + strand, within Dsui_0019 at 17.480 kb on + strand, within Dsui_0019 at 17.488 kb on - strand, within Dsui_0019 at 17.488 kb on - strand, within Dsui_0019 at 17.527 kb on + strand, within Dsui_0019 at 17.742 kb on - strand, within Dsui_0019 at 17.795 kb on + strand, within Dsui_0019 at 17.891 kb on - strand, within Dsui_0019 at 17.915 kb on + strand, within Dsui_0019 at 18.020 kb on + strand at 18.048 kb on - strand at 18.098 kb on + strand at 18.120 kb on + strand at 18.145 kb on + strand at 18.146 kb on - strand at 18.151 kb on + strand at 18.216 kb on + strand at 18.224 kb on - strand at 18.231 kb on - strand at 18.231 kb on - strand at 18.233 kb on + strand at 18.233 kb on + strand at 18.278 kb on + strand at 18.284 kb on + strand at 18.290 kb on - strand at 18.330 kb on - strand at 18.391 kb on + strand at 18.507 kb on + strand at 18.515 kb on - strand, within Dsui_0020 at 18.527 kb on + strand, within Dsui_0020 at 18.580 kb on - strand, within Dsui_0020 at 18.580 kb on - strand, within Dsui_0020 at 18.633 kb on + strand, within Dsui_0020 at 18.727 kb on + strand, within Dsui_0020 at 18.845 kb on + strand, within Dsui_0020 at 18.881 kb on - strand, within Dsui_0020 at 18.939 kb on + strand at 18.947 kb on - strand, within Dsui_0020 at 18.950 kb on + strand at 18.988 kb on + strand at 18.988 kb on + strand at 19.032 kb on + strand at 19.059 kb on - strand at 19.095 kb on + strand, within Dsui_0021 at 19.102 kb on - strand, within Dsui_0021 at 19.286 kb on - strand at 19.296 kb on - strand at 19.301 kb on - strand at 19.343 kb on + strand at 19.353 kb on - strand at 19.368 kb on + strand at 19.434 kb on - strand at 19.434 kb on - strand at 19.434 kb on - strand at 19.531 kb on + strand, within Dsui_0022 at 19.584 kb on + strand, within Dsui_0022 at 19.592 kb on - strand at 19.700 kb on + strand, within Dsui_0022 at 19.702 kb on - strand, within Dsui_0022 at 19.723 kb on + strand, within Dsui_0022 at 19.775 kb on - strand at 19.818 kb on + strand, within Dsui_0022 at 19.897 kb on + strand, within Dsui_0022 at 19.905 kb on - strand, within Dsui_0022 at 19.981 kb on + strand, within Dsui_0022 at 20.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 17,276 + Dsui_0019 0.45 -1.3 17,284 - Dsui_0019 0.45 -1.5 17,303 - Dsui_0019 0.47 -3.5 17,336 + Dsui_0019 0.49 -1.0 17,432 + Dsui_0019 0.55 -4.0 17,480 + Dsui_0019 0.58 -3.8 17,488 - Dsui_0019 0.58 -0.1 17,488 - Dsui_0019 0.58 +0.2 17,527 + Dsui_0019 0.61 -4.5 17,742 - Dsui_0019 0.74 -1.7 17,795 + Dsui_0019 0.77 -0.4 17,891 - Dsui_0019 0.83 -2.1 17,915 + Dsui_0019 0.85 -2.9 18,020 + -1.2 18,048 - -1.9 18,098 + -4.2 18,120 + +0.2 18,145 + -1.8 18,146 - +3.2 18,151 + -1.0 18,216 + +0.2 18,224 - -1.4 18,231 - -1.4 18,231 - +0.2 18,233 + -0.6 18,233 + +1.3 18,278 + +0.2 18,284 + -0.0 18,290 - -0.7 18,330 - -0.0 18,391 + +1.2 18,507 + +1.6 18,515 - Dsui_0020 0.31 -1.1 18,527 + Dsui_0020 0.32 -0.1 18,580 - Dsui_0020 0.39 -0.6 18,580 - Dsui_0020 0.39 +0.1 18,633 + Dsui_0020 0.46 -1.0 18,727 + Dsui_0020 0.57 +0.9 18,845 + Dsui_0020 0.72 -0.4 18,881 - Dsui_0020 0.77 +1.3 18,939 + -0.4 18,947 - Dsui_0020 0.85 -0.1 18,950 + -0.4 18,988 + -0.1 18,988 + +0.3 19,032 + +0.2 19,059 - -0.1 19,095 + Dsui_0021 0.15 +0.7 19,102 - Dsui_0021 0.18 +0.3 19,286 - -0.9 19,296 - -0.9 19,301 - +0.6 19,343 + -0.1 19,353 - +0.6 19,368 + +0.1 19,434 - +0.7 19,434 - +2.2 19,434 - +0.2 19,531 + Dsui_0022 0.14 -0.6 19,584 + Dsui_0022 0.19 +1.2 19,592 - -0.1 19,700 + Dsui_0022 0.32 +0.3 19,702 - Dsui_0022 0.32 -0.6 19,723 + Dsui_0022 0.34 -0.0 19,775 - +0.8 19,818 + Dsui_0022 0.44 +0.1 19,897 + Dsui_0022 0.53 +0.7 19,905 - Dsui_0022 0.53 +0.0 19,981 + Dsui_0022 0.62 -0.1 20,059 - +0.6
Or see this region's nucleotide sequence