Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2819

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2817 and DvMF_2818 are separated by 8 nucleotidesDvMF_2818 and DvMF_2819 are separated by 326 nucleotidesDvMF_2819 and DvMF_2820 are separated by 81 nucleotides DvMF_2817: DvMF_2817 - hypothetical protein (RefSeq), at 3,563,002 to 3,563,328 _2817 DvMF_2818: DvMF_2818 - methylated-DNA/protein-cysteine methyltransferase (RefSeq), at 3,563,337 to 3,563,981 _2818 DvMF_2819: DvMF_2819 - conserved hypothetical radical SAM protein (RefSeq), at 3,564,308 to 3,565,426 _2819 DvMF_2820: DvMF_2820 - rod shape-determining protein MreB (RefSeq), at 3,565,508 to 3,566,548 _2820 Position (kb) 3564 3565 3566Strain fitness (log2 ratio) -1 0 1at 3563.323 kb on - strandat 3563.330 kb on + strandat 3563.338 kb on - strandat 3563.501 kb on + strand, within DvMF_2818at 3563.806 kb on - strand, within DvMF_2818at 3563.852 kb on - strand, within DvMF_2818at 3564.249 kb on - strandat 3564.267 kb on + strandat 3564.267 kb on + strandat 3564.275 kb on - strandat 3564.275 kb on - strandat 3564.296 kb on - strandat 3564.348 kb on + strandat 3564.383 kb on + strandat 3564.386 kb on - strandat 3564.484 kb on - strand, within DvMF_2819at 3564.553 kb on - strand, within DvMF_2819at 3564.553 kb on - strand, within DvMF_2819at 3564.707 kb on + strand, within DvMF_2819at 3564.789 kb on - strand, within DvMF_2819at 3564.805 kb on + strand, within DvMF_2819at 3564.853 kb on - strand, within DvMF_2819at 3564.869 kb on - strand, within DvMF_2819at 3565.069 kb on - strand, within DvMF_2819at 3565.177 kb on + strand, within DvMF_2819at 3565.212 kb on - strand, within DvMF_2819

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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3,563,323 - -0.2
3,563,330 + -0.2
3,563,338 - -0.4
3,563,501 + DvMF_2818 0.25 -0.6
3,563,806 - DvMF_2818 0.73 -0.2
3,563,852 - DvMF_2818 0.80 -0.0
3,564,249 - -0.1
3,564,267 + -0.9
3,564,267 + -0.3
3,564,275 - +0.1
3,564,275 - -0.2
3,564,296 - -0.4
3,564,348 + -0.4
3,564,383 + -0.0
3,564,386 - -0.3
3,564,484 - DvMF_2819 0.16 -0.1
3,564,553 - DvMF_2819 0.22 -0.5
3,564,553 - DvMF_2819 0.22 -0.2
3,564,707 + DvMF_2819 0.36 -0.7
3,564,789 - DvMF_2819 0.43 -0.5
3,564,805 + DvMF_2819 0.44 -0.4
3,564,853 - DvMF_2819 0.49 -0.1
3,564,869 - DvMF_2819 0.50 +0.2
3,565,069 - DvMF_2819 0.68 -0.1
3,565,177 + DvMF_2819 0.78 +0.2
3,565,212 - DvMF_2819 0.81 -1.1

Or see this region's nucleotide sequence