Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2805

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2804 and DvMF_2805 are separated by 132 nucleotidesDvMF_2805 and DvMF_2806 are separated by 178 nucleotidesDvMF_2806 and DvMF_2807 are separated by 39 nucleotides DvMF_2804: DvMF_2804 - chromate transporter, chromate ion transporter (CHR) family (RefSeq), at 3,546,444 to 3,547,856 _2804 DvMF_2805: DvMF_2805 - ChrB protein (RefSeq), at 3,547,989 to 3,549,080 _2805 DvMF_2806: DvMF_2806 - hypothetical protein (RefSeq), at 3,549,259 to 3,549,816 _2806 DvMF_2807: DvMF_2807 - major facilitator superfamily MFS_1 (RefSeq), at 3,549,856 to 3,551,100 _2807 Position (kb) 3547 3548 3549 3550Strain fitness (log2 ratio) -1 0 1at 3546.993 kb on + strand, within DvMF_2804at 3547.021 kb on - strand, within DvMF_2804at 3547.492 kb on + strand, within DvMF_2804at 3547.492 kb on + strand, within DvMF_2804at 3547.500 kb on - strand, within DvMF_2804at 3547.663 kb on - strand, within DvMF_2804at 3548.119 kb on - strand, within DvMF_2805at 3548.125 kb on - strand, within DvMF_2805at 3548.133 kb on - strand, within DvMF_2805at 3548.187 kb on + strand, within DvMF_2805at 3548.192 kb on + strand, within DvMF_2805at 3548.559 kb on - strand, within DvMF_2805at 3548.791 kb on + strand, within DvMF_2805at 3548.899 kb on + strand, within DvMF_2805at 3548.907 kb on - strand, within DvMF_2805at 3549.373 kb on - strand, within DvMF_2806at 3549.460 kb on - strand, within DvMF_2806at 3549.609 kb on + strand, within DvMF_2806at 3549.758 kb on - strand, within DvMF_2806at 3549.781 kb on - strandat 3549.873 kb on + strandat 3549.873 kb on + strandat 3550.032 kb on + strand, within DvMF_2807

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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3,546,993 + DvMF_2804 0.39 -0.6
3,547,021 - DvMF_2804 0.41 -0.1
3,547,492 + DvMF_2804 0.74 -0.1
3,547,492 + DvMF_2804 0.74 -0.2
3,547,500 - DvMF_2804 0.75 -0.6
3,547,663 - DvMF_2804 0.86 -1.0
3,548,119 - DvMF_2805 0.12 -0.4
3,548,125 - DvMF_2805 0.12 +0.3
3,548,133 - DvMF_2805 0.13 -0.3
3,548,187 + DvMF_2805 0.18 -0.1
3,548,192 + DvMF_2805 0.19 +0.4
3,548,559 - DvMF_2805 0.52 -0.6
3,548,791 + DvMF_2805 0.73 +0.0
3,548,899 + DvMF_2805 0.83 -0.2
3,548,907 - DvMF_2805 0.84 -0.1
3,549,373 - DvMF_2806 0.20 -0.2
3,549,460 - DvMF_2806 0.36 +0.3
3,549,609 + DvMF_2806 0.63 +0.0
3,549,758 - DvMF_2806 0.89 -0.2
3,549,781 - +0.5
3,549,873 + -0.5
3,549,873 + -0.1
3,550,032 + DvMF_2807 0.14 -0.5

Or see this region's nucleotide sequence