Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2587

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2586 and DvMF_2587 are separated by 552 nucleotidesDvMF_2587 and DvMF_2588 are separated by 77 nucleotidesDvMF_2588 and DvMF_2589 are separated by 236 nucleotides DvMF_2586: DvMF_2586 - hypothetical protein (RefSeq), at 3,271,343 to 3,271,759 _2586 DvMF_2587: DvMF_2587 - maf protein (RefSeq), at 3,272,312 to 3,272,962 _2587 DvMF_2588: DvMF_2588 - phosphatidylglycerophosphatase A (RefSeq), at 3,273,040 to 3,273,564 _2588 DvMF_2589: DvMF_2589 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 3,273,801 to 3,274,532 _2589 Position (kb) 3272 3273Strain fitness (log2 ratio) -1 0 1at 3271.341 kb on + strandat 3271.864 kb on - strandat 3271.875 kb on - strandat 3272.162 kb on - strandat 3272.172 kb on - strandat 3272.206 kb on - strandat 3272.530 kb on + strand, within DvMF_2587at 3272.597 kb on + strand, within DvMF_2587at 3272.629 kb on + strand, within DvMF_2587at 3272.778 kb on + strand, within DvMF_2587at 3272.961 kb on + strandat 3272.961 kb on + strandat 3273.576 kb on - strandat 3273.610 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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3,271,341 + -0.0
3,271,864 - -0.3
3,271,875 - -0.4
3,272,162 - -0.3
3,272,172 - -0.7
3,272,206 - +0.2
3,272,530 + DvMF_2587 0.33 -0.4
3,272,597 + DvMF_2587 0.44 -0.7
3,272,629 + DvMF_2587 0.49 -0.2
3,272,778 + DvMF_2587 0.72 -0.9
3,272,961 + -0.4
3,272,961 + -0.2
3,273,576 - -0.3
3,273,610 + -0.3

Or see this region's nucleotide sequence