Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2159 and DvMF_2160 are separated by 196 nucleotides DvMF_2160 and DvMF_2161 are separated by 142 nucleotides DvMF_2161 and DvMF_2162 overlap by 4 nucleotides
DvMF_2159: DvMF_2159 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,692,492 to 2,694,081
_2159
DvMF_2160: DvMF_2160 - hypothetical protein (RefSeq), at 2,694,278 to 2,694,454
_2160
DvMF_2161: DvMF_2161 - transcriptional regulator, MarR family (RefSeq), at 2,694,597 to 2,695,127
_2161
DvMF_2162: DvMF_2162 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,695,124 to 2,696,593
_2162
Position (kb)
2694
2695 Strain fitness (log2 ratio)
-2
-1
0
1 at 2693.383 kb on + strand, within DvMF_2159 at 2693.849 kb on - strand, within DvMF_2159 at 2693.860 kb on + strand, within DvMF_2159 at 2693.955 kb on + strand at 2693.962 kb on + strand at 2693.963 kb on - strand at 2693.970 kb on - strand at 2694.000 kb on - strand at 2694.106 kb on - strand at 2694.182 kb on - strand at 2694.197 kb on - strand at 2694.233 kb on - strand at 2694.252 kb on + strand at 2694.410 kb on + strand, within DvMF_2160 at 2694.749 kb on + strand, within DvMF_2161 at 2694.784 kb on + strand, within DvMF_2161 at 2694.784 kb on + strand, within DvMF_2161 at 2694.989 kb on + strand, within DvMF_2161 at 2695.123 kb on - strand at 2695.198 kb on - strand at 2695.391 kb on + strand, within DvMF_2162
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml remove 2,693,383 + DvMF_2159 0.56 -0.1 2,693,849 - DvMF_2159 0.85 -0.4 2,693,860 + DvMF_2159 0.86 -0.3 2,693,955 + -0.4 2,693,962 + -0.5 2,693,963 - -0.3 2,693,970 - -0.6 2,694,000 - -0.5 2,694,106 - -0.2 2,694,182 - -0.7 2,694,197 - -0.2 2,694,233 - -0.2 2,694,252 + -0.3 2,694,410 + DvMF_2160 0.75 -0.2 2,694,749 + DvMF_2161 0.29 +0.8 2,694,784 + DvMF_2161 0.35 +0.8 2,694,784 + DvMF_2161 0.35 +0.6 2,694,989 + DvMF_2161 0.74 +0.9 2,695,123 - +0.6 2,695,198 - -2.2 2,695,391 + DvMF_2162 0.18 -2.5
Or see this region's nucleotide sequence