Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1930

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1929 and DvMF_1930 are separated by 120 nucleotidesDvMF_1930 and DvMF_1931 are separated by 11 nucleotides DvMF_1929: DvMF_1929 - peptidase M24 (RefSeq), at 2,379,495 to 2,380,565 _1929 DvMF_1930: DvMF_1930 - protein of unknown function DUF336 (RefSeq), at 2,380,686 to 2,381,120 _1930 DvMF_1931: DvMF_1931 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 2,381,132 to 2,383,054 _1931 Position (kb) 2380 2381 2382Strain fitness (log2 ratio) -1 0 1at 2379.688 kb on - strand, within DvMF_1929at 2379.701 kb on + strand, within DvMF_1929at 2379.778 kb on - strand, within DvMF_1929at 2379.859 kb on - strand, within DvMF_1929at 2379.859 kb on - strand, within DvMF_1929at 2379.908 kb on + strand, within DvMF_1929at 2380.075 kb on - strand, within DvMF_1929at 2380.156 kb on - strand, within DvMF_1929at 2380.187 kb on + strand, within DvMF_1929at 2380.210 kb on + strand, within DvMF_1929at 2380.210 kb on + strand, within DvMF_1929at 2380.252 kb on + strand, within DvMF_1929at 2380.260 kb on - strand, within DvMF_1929at 2380.490 kb on + strandat 2380.661 kb on + strandat 2380.871 kb on + strand, within DvMF_1930at 2380.906 kb on - strand, within DvMF_1930at 2381.069 kb on - strand, within DvMF_1930at 2381.130 kb on + strandat 2381.162 kb on - strandat 2381.190 kb on - strandat 2381.266 kb on + strandat 2381.266 kb on + strandat 2381.539 kb on + strand, within DvMF_1931at 2381.901 kb on + strand, within DvMF_1931at 2381.909 kb on - strand, within DvMF_1931at 2381.945 kb on - strand, within DvMF_1931at 2382.067 kb on + strand, within DvMF_1931

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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2,379,688 - DvMF_1929 0.18 -0.2
2,379,701 + DvMF_1929 0.19 +0.3
2,379,778 - DvMF_1929 0.26 +0.1
2,379,859 - DvMF_1929 0.34 +0.1
2,379,859 - DvMF_1929 0.34 +1.6
2,379,908 + DvMF_1929 0.39 +0.2
2,380,075 - DvMF_1929 0.54 +0.0
2,380,156 - DvMF_1929 0.62 +0.3
2,380,187 + DvMF_1929 0.65 -0.3
2,380,210 + DvMF_1929 0.67 +0.1
2,380,210 + DvMF_1929 0.67 -0.1
2,380,252 + DvMF_1929 0.71 +0.2
2,380,260 - DvMF_1929 0.71 +0.2
2,380,490 + +0.2
2,380,661 + +0.1
2,380,871 + DvMF_1930 0.43 +0.1
2,380,906 - DvMF_1930 0.51 +0.6
2,381,069 - DvMF_1930 0.88 -0.1
2,381,130 + -0.4
2,381,162 - -0.1
2,381,190 - -0.5
2,381,266 + -0.5
2,381,266 + -0.3
2,381,539 + DvMF_1931 0.21 -0.5
2,381,901 + DvMF_1931 0.40 -0.9
2,381,909 - DvMF_1931 0.40 +0.4
2,381,945 - DvMF_1931 0.42 -0.1
2,382,067 + DvMF_1931 0.49 -0.0

Or see this region's nucleotide sequence