Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1927

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1925 and DvMF_1926 are separated by 434 nucleotidesDvMF_1926 and DvMF_1927 are separated by 73 nucleotidesDvMF_1927 and DvMF_1928 are separated by 231 nucleotides DvMF_1925: DvMF_1925 - aminoglycoside phosphotransferase (RefSeq), at 2,373,740 to 2,375,062 _1925 DvMF_1926: DvMF_1926 - transcriptional regulator, TraR/DksA family (RefSeq), at 2,375,497 to 2,375,838 _1926 DvMF_1927: DvMF_1927 - glycosyl transferase family 2 (RefSeq), at 2,375,912 to 2,377,843 _1927 DvMF_1928: DvMF_1928 - FAD dependent oxidoreductase (RefSeq), at 2,378,075 to 2,379,457 _1928 Position (kb) 2375 2376 2377 2378Strain fitness (log2 ratio) -2 -1 0 1at 2374.973 kb on - strandat 2375.478 kb on + strandat 2375.491 kb on - strandat 2375.570 kb on - strand, within DvMF_1926at 2375.594 kb on - strand, within DvMF_1926at 2375.823 kb on + strandat 2375.895 kb on + strandat 2375.925 kb on + strandat 2376.025 kb on - strandat 2376.360 kb on - strand, within DvMF_1927at 2376.380 kb on + strand, within DvMF_1927at 2376.424 kb on - strand, within DvMF_1927at 2376.456 kb on + strand, within DvMF_1927at 2376.539 kb on - strand, within DvMF_1927at 2376.630 kb on + strand, within DvMF_1927at 2376.902 kb on - strand, within DvMF_1927at 2377.018 kb on + strand, within DvMF_1927at 2377.224 kb on + strand, within DvMF_1927at 2377.338 kb on - strand, within DvMF_1927at 2377.481 kb on - strand, within DvMF_1927at 2377.539 kb on - strand, within DvMF_1927at 2377.936 kb on + strandat 2378.059 kb on + strandat 2378.537 kb on + strand, within DvMF_1928at 2378.620 kb on - strand, within DvMF_1928

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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2,374,973 - -0.6
2,375,478 + -0.1
2,375,491 - +0.1
2,375,570 - DvMF_1926 0.21 -0.5
2,375,594 - DvMF_1926 0.28 -0.4
2,375,823 + -0.3
2,375,895 + -0.2
2,375,925 + -0.2
2,376,025 - -0.2
2,376,360 - DvMF_1927 0.23 -0.3
2,376,380 + DvMF_1927 0.24 -0.3
2,376,424 - DvMF_1927 0.27 -0.3
2,376,456 + DvMF_1927 0.28 -0.5
2,376,539 - DvMF_1927 0.32 -0.3
2,376,630 + DvMF_1927 0.37 -0.3
2,376,902 - DvMF_1927 0.51 -0.4
2,377,018 + DvMF_1927 0.57 -0.4
2,377,224 + DvMF_1927 0.68 -1.9
2,377,338 - DvMF_1927 0.74 -0.6
2,377,481 - DvMF_1927 0.81 -1.0
2,377,539 - DvMF_1927 0.84 +0.0
2,377,936 + -1.2
2,378,059 + -0.8
2,378,537 + DvMF_1928 0.33 -2.5
2,378,620 - DvMF_1928 0.39 -1.2

Or see this region's nucleotide sequence