Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1305 and DvMF_1306 are separated by 10 nucleotides DvMF_1306 and DvMF_1307 are separated by 280 nucleotides DvMF_1307 and DvMF_1308 overlap by 17 nucleotides DvMF_1308 and DvMF_1309 are separated by 77 nucleotides
DvMF_1305: DvMF_1305 - tail fiber protein, putative (RefSeq), at 1,594,256 to 1,595,773
_1305
DvMF_1306: DvMF_1306 - hypothetical protein (RefSeq), at 1,595,784 to 1,596,242
_1306
DvMF_1307: DvMF_1307 - hypothetical protein (RefSeq), at 1,596,523 to 1,596,708
_1307
DvMF_1308: DvMF_1308 - DNA methylase N-4/N-6 domain protein (RefSeq), at 1,596,692 to 1,597,453
_1308
DvMF_1309: DvMF_1309 - hypothetical protein (RefSeq), at 1,597,531 to 1,598,331
_1309
Position (kb)
1596
1597 Strain fitness (log2 ratio)
-1
0
1 at 1595.703 kb on - strand at 1595.894 kb on - strand, within DvMF_1306 at 1595.940 kb on - strand, within DvMF_1306 at 1595.940 kb on - strand, within DvMF_1306 at 1595.940 kb on - strand, within DvMF_1306 at 1596.114 kb on + strand, within DvMF_1306 at 1596.223 kb on - strand at 1596.232 kb on + strand at 1596.385 kb on - strand at 1596.598 kb on - strand, within DvMF_1307 at 1596.755 kb on - strand at 1596.870 kb on - strand, within DvMF_1308 at 1596.945 kb on + strand, within DvMF_1308 at 1596.953 kb on - strand, within DvMF_1308 at 1597.088 kb on - strand, within DvMF_1308 at 1597.156 kb on - strand, within DvMF_1308 at 1597.251 kb on - strand, within DvMF_1308 at 1597.365 kb on + strand, within DvMF_1308
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml remove 1,595,703 - +0.1 1,595,894 - DvMF_1306 0.24 +0.2 1,595,940 - DvMF_1306 0.34 +0.1 1,595,940 - DvMF_1306 0.34 -0.0 1,595,940 - DvMF_1306 0.34 +0.0 1,596,114 + DvMF_1306 0.72 -0.2 1,596,223 - -0.6 1,596,232 + -0.2 1,596,385 - -0.1 1,596,598 - DvMF_1307 0.40 +0.2 1,596,755 - +0.4 1,596,870 - DvMF_1308 0.23 -0.2 1,596,945 + DvMF_1308 0.33 +0.2 1,596,953 - DvMF_1308 0.34 +0.0 1,597,088 - DvMF_1308 0.52 +0.1 1,597,156 - DvMF_1308 0.61 -0.2 1,597,251 - DvMF_1308 0.73 +0.4 1,597,365 + DvMF_1308 0.88 -0.0
Or see this region's nucleotide sequence