Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1306

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1305 and DvMF_1306 are separated by 10 nucleotidesDvMF_1306 and DvMF_1307 are separated by 280 nucleotidesDvMF_1307 and DvMF_1308 overlap by 17 nucleotides DvMF_1305: DvMF_1305 - tail fiber protein, putative (RefSeq), at 1,594,256 to 1,595,773 _1305 DvMF_1306: DvMF_1306 - hypothetical protein (RefSeq), at 1,595,784 to 1,596,242 _1306 DvMF_1307: DvMF_1307 - hypothetical protein (RefSeq), at 1,596,523 to 1,596,708 _1307 DvMF_1308: DvMF_1308 - DNA methylase N-4/N-6 domain protein (RefSeq), at 1,596,692 to 1,597,453 _1308 Position (kb) 1595 1596 1597Strain fitness (log2 ratio) -1 0 1at 1594.901 kb on + strand, within DvMF_1305at 1594.907 kb on + strand, within DvMF_1305at 1594.956 kb on - strand, within DvMF_1305at 1594.989 kb on - strand, within DvMF_1305at 1595.703 kb on - strandat 1595.894 kb on - strand, within DvMF_1306at 1595.940 kb on - strand, within DvMF_1306at 1595.940 kb on - strand, within DvMF_1306at 1595.940 kb on - strand, within DvMF_1306at 1596.114 kb on + strand, within DvMF_1306at 1596.223 kb on - strandat 1596.232 kb on + strandat 1596.385 kb on - strandat 1596.598 kb on - strand, within DvMF_1307at 1596.755 kb on - strandat 1596.870 kb on - strand, within DvMF_1308at 1596.945 kb on + strand, within DvMF_1308at 1596.953 kb on - strand, within DvMF_1308at 1597.088 kb on - strand, within DvMF_1308at 1597.156 kb on - strand, within DvMF_1308

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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1,594,901 + DvMF_1305 0.42 +0.4
1,594,907 + DvMF_1305 0.43 -0.3
1,594,956 - DvMF_1305 0.46 -0.0
1,594,989 - DvMF_1305 0.48 +0.6
1,595,703 - +0.1
1,595,894 - DvMF_1306 0.24 +0.2
1,595,940 - DvMF_1306 0.34 +0.1
1,595,940 - DvMF_1306 0.34 -0.0
1,595,940 - DvMF_1306 0.34 +0.0
1,596,114 + DvMF_1306 0.72 -0.2
1,596,223 - -0.6
1,596,232 + -0.2
1,596,385 - -0.1
1,596,598 - DvMF_1307 0.40 +0.2
1,596,755 - +0.4
1,596,870 - DvMF_1308 0.23 -0.2
1,596,945 + DvMF_1308 0.33 +0.2
1,596,953 - DvMF_1308 0.34 +0.0
1,597,088 - DvMF_1308 0.52 +0.1
1,597,156 - DvMF_1308 0.61 -0.2

Or see this region's nucleotide sequence