Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1094

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1092 and DvMF_1093 overlap by 10 nucleotidesDvMF_1093 and DvMF_1094 are separated by 294 nucleotidesDvMF_1094 and DvMF_1095 are separated by 333 nucleotides DvMF_1092: DvMF_1092 - hypothetical protein (RefSeq), at 1,334,955 to 1,335,386 _1092 DvMF_1093: DvMF_1093 - hypothetical protein (RefSeq), at 1,335,377 to 1,335,685 _1093 DvMF_1094: DvMF_1094 - putative phage repressor (RefSeq), at 1,335,980 to 1,336,729 _1094 DvMF_1095: DvMF_1095 - hypothetical protein (RefSeq), at 1,337,063 to 1,337,449 _1095 Position (kb) 1335 1336 1337Strain fitness (log2 ratio) -1 0 1at 1334.985 kb on + strandat 1335.220 kb on + strand, within DvMF_1092at 1335.256 kb on + strand, within DvMF_1092at 1335.274 kb on + strand, within DvMF_1092at 1335.564 kb on - strand, within DvMF_1093at 1335.565 kb on + strand, within DvMF_1093at 1335.869 kb on - strandat 1335.869 kb on - strandat 1336.922 kb on + strandat 1336.944 kb on + strandat 1336.952 kb on - strandat 1337.336 kb on - strand, within DvMF_1095at 1337.444 kb on - strandat 1337.590 kb on - strandat 1337.590 kb on - strandat 1337.672 kb on - strandat 1337.672 kb on - strandat 1337.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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1,334,985 + -0.5
1,335,220 + DvMF_1092 0.61 -0.2
1,335,256 + DvMF_1092 0.70 +0.4
1,335,274 + DvMF_1092 0.74 -0.2
1,335,564 - DvMF_1093 0.61 -0.2
1,335,565 + DvMF_1093 0.61 -0.7
1,335,869 - +1.3
1,335,869 - +0.0
1,336,922 + -0.3
1,336,944 + -0.3
1,336,952 - -0.3
1,337,336 - DvMF_1095 0.71 -0.4
1,337,444 - +0.1
1,337,590 - -0.7
1,337,590 - -1.0
1,337,672 - -0.9
1,337,672 - -0.2
1,337,672 - -0.1

Or see this region's nucleotide sequence