Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0752

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0751 and DvMF_0752 are separated by 8 nucleotidesDvMF_0752 and DvMF_0753 are separated by 285 nucleotidesDvMF_0753 and DvMF_0754 overlap by 35 nucleotides DvMF_0751: DvMF_0751 - hypothetical protein (RefSeq), at 897,835 to 899,127 _0751 DvMF_0752: DvMF_0752 - hypothetical protein (RefSeq), at 899,136 to 899,693 _0752 DvMF_0753: DvMF_0753 - hypothetical protein (RefSeq), at 899,979 to 900,185 _0753 DvMF_0754: DvMF_0754 - putative DNA modification protein (RefSeq), at 900,151 to 900,882 _0754 Position (kb) 899 900Strain fitness (log2 ratio) -1 0 1at 898.240 kb on + strand, within DvMF_0751at 898.270 kb on - strand, within DvMF_0751at 898.321 kb on + strand, within DvMF_0751at 898.376 kb on - strand, within DvMF_0751at 898.376 kb on - strand, within DvMF_0751at 898.446 kb on - strand, within DvMF_0751at 898.477 kb on + strand, within DvMF_0751at 898.604 kb on + strand, within DvMF_0751at 898.653 kb on + strand, within DvMF_0751at 898.656 kb on - strand, within DvMF_0751at 898.727 kb on - strand, within DvMF_0751at 898.828 kb on - strand, within DvMF_0751at 898.847 kb on - strand, within DvMF_0751at 898.862 kb on - strand, within DvMF_0751at 899.146 kb on - strandat 899.158 kb on - strandat 899.211 kb on - strand, within DvMF_0752at 899.219 kb on - strand, within DvMF_0752at 899.248 kb on - strand, within DvMF_0752at 899.930 kb on - strandat 899.931 kb on - strandat 900.161 kb on - strandat 900.161 kb on - strandat 900.161 kb on - strandat 900.194 kb on - strandat 900.199 kb on + strandat 900.553 kb on + strand, within DvMF_0754at 900.688 kb on + strand, within DvMF_0754

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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898,240 + DvMF_0751 0.31 +0.3
898,270 - DvMF_0751 0.34 +0.4
898,321 + DvMF_0751 0.38 +0.4
898,376 - DvMF_0751 0.42 +0.3
898,376 - DvMF_0751 0.42 +0.3
898,446 - DvMF_0751 0.47 +0.0
898,477 + DvMF_0751 0.50 +0.1
898,604 + DvMF_0751 0.59 +0.2
898,653 + DvMF_0751 0.63 +0.6
898,656 - DvMF_0751 0.63 +0.1
898,727 - DvMF_0751 0.69 +0.2
898,828 - DvMF_0751 0.77 +0.3
898,847 - DvMF_0751 0.78 +0.5
898,862 - DvMF_0751 0.79 +0.3
899,146 - +0.7
899,158 - +0.4
899,211 - DvMF_0752 0.13 +0.5
899,219 - DvMF_0752 0.15 +0.2
899,248 - DvMF_0752 0.20 -0.1
899,930 - +0.2
899,931 - -0.2
900,161 - +0.3
900,161 - +0.5
900,161 - +0.2
900,194 - -0.1
900,199 + +0.5
900,553 + DvMF_0754 0.55 +0.3
900,688 + DvMF_0754 0.73 +0.4

Or see this region's nucleotide sequence