Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0389

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0388 and DvMF_0389 are separated by 250 nucleotidesDvMF_0389 and DvMF_0390 are separated by 267 nucleotides DvMF_0388: DvMF_0388 - hypothetical protein (RefSeq), at 456,118 to 456,942 _0388 DvMF_0389: DvMF_0389 - Beta-lactamase (RefSeq), at 457,193 to 458,038 _0389 DvMF_0390: DvMF_0390 - hypothetical protein (RefSeq), at 458,306 to 459,697 _0390 Position (kb) 457 458 459Strain fitness (log2 ratio) -1 0 1at 456.234 kb on + strand, within DvMF_0388at 456.253 kb on + strand, within DvMF_0388at 456.269 kb on + strand, within DvMF_0388at 456.737 kb on + strand, within DvMF_0388at 456.787 kb on - strand, within DvMF_0388at 457.256 kb on - strandat 457.309 kb on + strand, within DvMF_0389at 457.400 kb on + strand, within DvMF_0389at 457.458 kb on + strand, within DvMF_0389at 457.472 kb on - strand, within DvMF_0389at 457.534 kb on - strand, within DvMF_0389at 457.661 kb on - strand, within DvMF_0389at 458.167 kb on + strandat 458.417 kb on - strandat 458.667 kb on + strand, within DvMF_0390at 458.675 kb on - strand, within DvMF_0390at 458.834 kb on - strand, within DvMF_0390at 458.881 kb on + strand, within DvMF_0390at 458.898 kb on + strand, within DvMF_0390

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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456,234 + DvMF_0388 0.14 -0.3
456,253 + DvMF_0388 0.16 -0.2
456,269 + DvMF_0388 0.18 -0.5
456,737 + DvMF_0388 0.75 -0.4
456,787 - DvMF_0388 0.81 -0.1
457,256 - -0.4
457,309 + DvMF_0389 0.14 -1.2
457,400 + DvMF_0389 0.24 -0.5
457,458 + DvMF_0389 0.31 -0.8
457,472 - DvMF_0389 0.33 -0.3
457,534 - DvMF_0389 0.40 -0.7
457,661 - DvMF_0389 0.55 -0.3
458,167 + -0.3
458,417 - +0.1
458,667 + DvMF_0390 0.26 +0.3
458,675 - DvMF_0390 0.27 +0.0
458,834 - DvMF_0390 0.38 +0.1
458,881 + DvMF_0390 0.41 -0.1
458,898 + DvMF_0390 0.43 -0.4

Or see this region's nucleotide sequence