Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0143 and DvMF_0144 are separated by 72 nucleotides DvMF_0144 and DvMF_0145 are separated by 125 nucleotides DvMF_0145 and DvMF_0146 overlap by 4 nucleotides DvMF_0146 and DvMF_0147 are separated by 6 nucleotides
DvMF_0143: DvMF_0143 - putative lipoprotein (RefSeq), at 159,913 to 160,863
_0143
DvMF_0144: DvMF_0144 - twin-arginine translocation protein, TatA/E family subunit (RefSeq), at 160,936 to 161,139
_0144
DvMF_0145: DvMF_0145 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 161,265 to 163,133
_0145
DvMF_0146: DvMF_0146 - hypothetical protein (RefSeq), at 163,130 to 163,639
_0146
DvMF_0147: DvMF_0147 - hypothetical protein (RefSeq), at 163,646 to 164,674
_0147
Position (kb) 161
162
163
164 Strain fitness (log2 ratio) -2
-1
0
1 at 160.463 kb on + strand, within DvMF_0143 at 160.494 kb on - strand, within DvMF_0143 at 160.558 kb on + strand, within DvMF_0143 at 160.599 kb on + strand, within DvMF_0143 at 161.231 kb on - strand at 161.633 kb on - strand, within DvMF_0145 at 161.709 kb on + strand, within DvMF_0145 at 161.973 kb on - strand, within DvMF_0145 at 162.007 kb on + strand, within DvMF_0145 at 162.033 kb on - strand, within DvMF_0145 at 162.046 kb on + strand, within DvMF_0145 at 162.060 kb on - strand, within DvMF_0145 at 162.060 kb on - strand, within DvMF_0145 at 162.150 kb on + strand, within DvMF_0145 at 162.171 kb on - strand, within DvMF_0145 at 162.423 kb on - strand, within DvMF_0145 at 162.558 kb on - strand, within DvMF_0145 at 162.886 kb on + strand, within DvMF_0145 at 162.886 kb on - strand, within DvMF_0145 at 163.103 kb on - strand at 163.127 kb on + strand at 163.375 kb on - strand, within DvMF_0146 at 163.466 kb on - strand, within DvMF_0146 at 163.624 kb on + strand at 163.624 kb on + strand at 163.632 kb on - strand at 163.632 kb on - strand at 163.632 kb on - strand at 163.682 kb on + strand at 163.690 kb on - strand at 163.874 kb on - strand, within DvMF_0147 at 163.900 kb on + strand, within DvMF_0147 at 163.942 kb on - strand, within DvMF_0147 at 164.022 kb on - strand, within DvMF_0147 at 164.037 kb on - strand, within DvMF_0147 at 164.048 kb on - strand, within DvMF_0147
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml remove 160,463 + DvMF_0143 0.58 -2.6 160,494 - DvMF_0143 0.61 -1.2 160,558 + DvMF_0143 0.68 -1.3 160,599 + DvMF_0143 0.72 -1.9 161,231 - +0.1 161,633 - DvMF_0145 0.20 +0.3 161,709 + DvMF_0145 0.24 -0.9 161,973 - DvMF_0145 0.38 -0.2 162,007 + DvMF_0145 0.40 -1.0 162,033 - DvMF_0145 0.41 +1.0 162,046 + DvMF_0145 0.42 -0.4 162,060 - DvMF_0145 0.43 +0.0 162,060 - DvMF_0145 0.43 -0.7 162,150 + DvMF_0145 0.47 -0.1 162,171 - DvMF_0145 0.48 +0.1 162,423 - DvMF_0145 0.62 -0.3 162,558 - DvMF_0145 0.69 -0.1 162,886 + DvMF_0145 0.87 -0.2 162,886 - DvMF_0145 0.87 +0.2 163,103 - -0.4 163,127 + -1.0 163,375 - DvMF_0146 0.48 -0.2 163,466 - DvMF_0146 0.66 +0.2 163,624 + -0.1 163,624 + -0.2 163,632 - -0.4 163,632 - -0.4 163,632 - -0.2 163,682 + -0.7 163,690 - -0.2 163,874 - DvMF_0147 0.22 -0.2 163,900 + DvMF_0147 0.25 -0.2 163,942 - DvMF_0147 0.29 +0.2 164,022 - DvMF_0147 0.37 -0.4 164,037 - DvMF_0147 0.38 -0.0 164,048 - DvMF_0147 0.39 -0.2
Or see this region's nucleotide sequence