Strain Fitness in Shewanella amazonensis SB2B

Strain Fitness in Shewanella amazonensis SB2B around Sama_3543

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	L-Glutamine
				remove
4,173,699	+	Sama_3541	0.52	-0.3
4,173,700	-	Sama_3541	0.52	+0.3
4,173,700	-	Sama_3541	0.52	-0.4
4,173,747	+	Sama_3541	0.57	+1.2
4,173,747	+	Sama_3541	0.57	-0.1
4,173,748	-	Sama_3541	0.57	+0.2
4,173,991	+	Sama_3541	0.84	-0.1
4,173,991	+	Sama_3541	0.84	-1.6
4,173,991	+	Sama_3541	0.84	-2.7
4,173,992	-	Sama_3541	0.85	+2.0
4,173,992	-	Sama_3541	0.85	-0.3
4,173,992	-	Sama_3541	0.85	+0.4
4,173,992	-	Sama_3541	0.85	-0.2
4,174,152	+			-1.7
4,174,152	+			+0.5
4,174,152	+			+0.2
4,174,152	+			-2.1
4,174,153	-			+1.6
4,174,153	-			-1.1
4,174,153	-			-0.5
4,174,153	-			+1.0
4,174,153	-			-0.6
4,174,180	+			-0.6
4,174,180	+			-1.7
4,174,181	-			+1.6
4,174,181	-			-1.1
4,174,181	-			-0.8
4,174,197	+			+0.8
4,174,197	+			-1.8
4,174,198	-			+1.2
4,174,198	-			+0.4
4,174,198	-			+1.3
4,174,263	+	Sama_3542	0.17	+0.4
4,174,263	+	Sama_3542	0.17	+1.4
4,174,263	+	Sama_3542	0.17	-0.1
4,174,264	-	Sama_3542	0.17	+0.2
4,174,264	-	Sama_3542	0.17	-0.8
4,174,264	-	Sama_3542	0.17	+0.5
4,174,275	+	Sama_3542	0.20	-0.6
4,174,275	+	Sama_3542	0.20	-0.1
4,174,275	+	Sama_3542	0.20	+0.6
4,174,275	+	Sama_3542	0.20	+1.4
4,174,275	+	Sama_3542	0.20	-0.6
4,174,275	+	Sama_3542	0.20	-0.3
4,174,275	+	Sama_3542	0.20	-0.1
4,174,276	-	Sama_3542	0.20	-0.9
4,174,276	-	Sama_3542	0.20	+0.1
4,174,286	+	Sama_3542	0.23	-0.3
4,174,286	+	Sama_3542	0.23	+0.3
4,174,287	-	Sama_3542	0.23	+0.0
4,174,309	+	Sama_3542	0.29	-0.2
4,174,309	+	Sama_3542	0.29	+0.2
4,174,310	-	Sama_3542	0.29	+0.6
4,174,335	+	Sama_3542	0.35	-0.3
4,174,335	+	Sama_3542	0.35	-0.6
4,174,336	-	Sama_3542	0.35	+0.4
4,174,536	+	Sama_3542	0.86	-0.2
4,174,537	-	Sama_3542	0.86	-0.5
4,174,537	-	Sama_3542	0.86	+0.4
4,174,537	-	Sama_3542	0.86	+0.8
4,174,557	+			+0.0
4,174,557	+			-0.3
4,174,557	+			-0.3
4,174,557	+			+0.3
4,174,557	+			+1.4
4,174,557	+			-0.7
4,174,558	-			-0.4
4,174,558	-			+0.4
4,174,558	-			+1.0
4,174,569	+			+2.0
4,174,569	+			+0.0
4,174,569	+			-2.2
4,174,569	+			+0.2
4,174,569	+			+0.6
4,174,569	+			+0.0
4,174,570	-			-1.1
4,174,570	-			-0.3
4,174,570	-			+0.5
4,174,570	-			+3.6
4,174,570	-			-1.2
4,174,570	-			-0.9
4,174,573	+			+0.7
4,174,573	+			-0.4
4,174,574	-			+0.2
4,174,574	-			+0.1
4,174,617	+			+1.3
4,174,617	+			+0.5
4,174,617	+			+0.7
4,174,618	-			-0.3
4,174,618	-			+1.3
4,174,618	-			-1.6
4,174,618	-			+0.0
4,174,644	+			+1.4
4,174,645	-			-1.2
4,174,650	+			+0.3
4,174,650	+			+0.0
4,174,650	+			+2.0
4,174,650	+			+0.4
4,174,650	+			-0.7
4,174,651	-			+0.8
4,174,651	-			+0.5
4,174,651	-			-1.4
4,174,651	-			+0.6
4,174,685	+			+0.7
4,174,686	-			-0.8
4,174,698	+			+0.7
4,174,698	+			+0.5
4,174,698	+			+1.4
4,174,699	-			+1.4
4,174,699	-			+0.6
4,174,701	+			+0.7
4,174,701	+			+2.0
4,174,701	+			+1.1
4,174,701	+			+0.2
4,174,701	+			+1.3
4,174,701	+			+0.3
4,174,701	+			+1.5
4,174,702	-			+1.0
4,174,702	-			-0.7
4,174,702	-			-0.2
4,174,702	-			+0.4
4,174,702	-			+0.2
4,174,702	-			+0.7
4,174,732	-			+0.5
4,174,735	+			-0.1
4,174,735	+			+0.9
4,174,735	+			+0.2
4,174,735	+			+0.3
4,174,735	+			+0.4
4,174,735	+			-0.3
4,174,735	+			+0.2
4,174,735	+			+1.1
4,174,735	+			-0.8
4,174,735	+			+5.4
4,174,735	+			+0.5
4,174,736	-			-0.1
4,174,736	-			+2.3
4,174,736	-			+0.3
4,174,736	-			-0.9
4,174,736	-			+0.2
4,174,736	-			+1.5
4,174,736	-			+0.6
4,174,907	+	Sama_3543	0.16	+1.9
4,174,907	+	Sama_3543	0.16	+0.6
4,174,907	+	Sama_3543	0.16	+0.6
4,174,907	+	Sama_3543	0.16	-1.3
4,174,907	+	Sama_3543	0.16	+0.9
4,174,907	+	Sama_3543	0.16	+0.6
4,174,907	+	Sama_3543	0.16	+1.0
4,174,907	+	Sama_3543	0.16	+0.6
4,174,907	+	Sama_3543	0.16	+0.5
4,174,908	-	Sama_3543	0.16	+0.0
4,174,908	-	Sama_3543	0.16	-1.9
4,174,908	-	Sama_3543	0.16	+0.3
4,174,908	-	Sama_3543	0.16	-1.3
4,174,908	-	Sama_3543	0.16	+0.7
4,174,908	-	Sama_3543	0.16	+0.6
4,174,908	-	Sama_3543	0.16	+2.0
4,174,931	+	Sama_3543	0.18	+1.6
4,174,931	+	Sama_3543	0.18	+1.0
4,174,931	+	Sama_3543	0.18	+0.5
4,174,931	+	Sama_3543	0.18	+1.0
4,174,931	+	Sama_3543	0.18	+0.2
4,174,932	-	Sama_3543	0.18	+1.4
4,174,932	-	Sama_3543	0.18	+0.0
4,174,932	-	Sama_3543	0.18	+0.5
4,174,932	-	Sama_3543	0.18	-0.1
4,174,932	-	Sama_3543	0.18	+1.7
4,174,932	-	Sama_3543	0.18	+1.2
4,174,932	-	Sama_3543	0.18	+1.0
4,174,955	+	Sama_3543	0.20	+0.3
4,174,955	+	Sama_3543	0.20	+0.6
4,174,997	-	Sama_3543	0.23	+0.7
4,175,014	+	Sama_3543	0.24	+0.6
4,175,014	+	Sama_3543	0.24	+1.7
4,175,015	-	Sama_3543	0.24	-0.1
4,175,015	-	Sama_3543	0.24	+1.9
4,175,036	+	Sama_3543	0.26	-0.7
4,175,037	-	Sama_3543	0.26	+0.2
4,175,037	-	Sama_3543	0.26	+0.9
4,175,037	-	Sama_3543	0.26	+0.2
4,175,112	+	Sama_3543	0.31	+0.4
4,175,112	+	Sama_3543	0.31	+0.5
4,175,121	+	Sama_3543	0.32	+1.1
4,175,136	+	Sama_3543	0.33	+1.4
4,175,137	-	Sama_3543	0.33	+0.6
4,175,150	+	Sama_3543	0.34	+2.4
4,175,150	+	Sama_3543	0.34	+1.0
4,175,150	+	Sama_3543	0.34	+1.5
4,175,150	+	Sama_3543	0.34	+0.3
4,175,150	+	Sama_3543	0.34	+0.5
4,175,150	+	Sama_3543	0.34	+0.1
4,175,150	+	Sama_3543	0.34	+0.9
4,175,150	+	Sama_3543	0.34	+0.8
4,175,151	-	Sama_3543	0.34	+0.4
4,175,151	-	Sama_3543	0.34	+0.3
4,175,151	-	Sama_3543	0.34	+0.2
4,175,151	-	Sama_3543	0.34	+1.1
4,175,151	-	Sama_3543	0.34	+0.8
4,175,151	-	Sama_3543	0.34	+0.9
4,175,151	-	Sama_3543	0.34	+1.6
4,175,154	+	Sama_3543	0.34	+1.1
4,175,154	+	Sama_3543	0.34	+0.5
4,175,154	+	Sama_3543	0.34	+0.0
4,175,154	+	Sama_3543	0.34	+0.6
4,175,155	-	Sama_3543	0.34	+0.4
4,175,155	-	Sama_3543	0.34	-0.7
4,175,155	-	Sama_3543	0.34	+1.4
4,175,155	-	Sama_3543	0.34	-1.9
4,175,155	-	Sama_3543	0.34	+0.6
4,175,155	-	Sama_3543	0.34	+0.9
4,175,155	-	Sama_3543	0.34	+0.7
4,175,155	-	Sama_3543	0.34	+1.2
4,175,155	-	Sama_3543	0.34	+0.3
4,175,188	+	Sama_3543	0.37	+0.7
4,175,188	+	Sama_3543	0.37	+0.4
4,175,188	+	Sama_3543	0.37	+0.9
4,175,195	+	Sama_3543	0.37	+0.2
4,175,195	+	Sama_3543	0.37	+0.7
4,175,195	+	Sama_3543	0.37	+0.3
4,175,195	+	Sama_3543	0.37	+0.5
4,175,195	+	Sama_3543	0.37	+1.0
4,175,195	+	Sama_3543	0.37	+1.0
4,175,195	+	Sama_3543	0.37	+1.8
4,175,196	-	Sama_3543	0.37	+0.0
4,175,196	-	Sama_3543	0.37	-0.1
4,175,196	-	Sama_3543	0.37	+0.9
4,175,196	-	Sama_3543	0.37	+1.1
4,175,196	-	Sama_3543	0.37	+0.7
4,175,215	+	Sama_3543	0.39	-2.0
4,175,215	+	Sama_3543	0.39	+0.3
4,175,215	+	Sama_3543	0.39	+0.7
4,175,215	+	Sama_3543	0.39	+1.3
4,175,215	+	Sama_3543	0.39	+1.8
4,175,215	+	Sama_3543	0.39	+0.4
4,175,215	+	Sama_3543	0.39	-0.2
4,175,215	+	Sama_3543	0.39	+0.2
4,175,215	+	Sama_3543	0.39	+1.0
4,175,215	+	Sama_3543	0.39	+1.3
4,175,215	+	Sama_3543	0.39	-0.5
4,175,215	+	Sama_3543	0.39	+0.5
4,175,216	-	Sama_3543	0.39	+1.6
4,175,216	-	Sama_3543	0.39	+1.9
4,175,216	-	Sama_3543	0.39	+2.4
4,175,216	-	Sama_3543	0.39	+2.0
4,175,216	-	Sama_3543	0.39	+1.3
4,175,216	-	Sama_3543	0.39	+1.0
4,175,223	+	Sama_3543	0.39	+0.0
4,175,224	-	Sama_3543	0.39	+0.0
4,175,224	-	Sama_3543	0.39	+0.5
4,175,367	+	Sama_3543	0.50	+0.4
4,175,368	-	Sama_3543	0.50	+0.8
4,175,368	-	Sama_3543	0.50	+1.4
4,175,433	+	Sama_3543	0.55	+0.3
4,175,451	+	Sama_3543	0.56	+0.4
4,175,451	+	Sama_3543	0.56	+1.6
4,175,514	+	Sama_3543	0.61	+0.5
4,175,514	+	Sama_3543	0.61	-0.8
4,175,514	+	Sama_3543	0.61	+0.4
4,175,514	+	Sama_3543	0.61	+0.8
4,175,514	+	Sama_3543	0.61	+0.7
4,175,514	+	Sama_3543	0.61	-0.6
4,175,514	+	Sama_3543	0.61	-0.7
4,175,514	+	Sama_3543	0.61	+0.0
4,175,514	+	Sama_3543	0.61	+0.9
4,175,515	-	Sama_3543	0.61	+0.6
4,175,515	-	Sama_3543	0.61	+0.7
4,175,515	-	Sama_3543	0.61	+3.0
4,175,515	-	Sama_3543	0.61	+1.5
4,175,515	-	Sama_3543	0.61	+0.5
4,175,515	-	Sama_3543	0.61	+0.2
4,175,515	-	Sama_3543	0.61	+1.1
4,175,515	-	Sama_3543	0.61	+2.0
4,175,515	-	Sama_3543	0.61	+0.5
4,175,583	+	Sama_3543	0.66	+0.4
4,175,643	+	Sama_3543	0.70	+1.2
4,175,643	+	Sama_3543	0.70	+0.8
4,175,644	-	Sama_3543	0.70	+0.7
4,175,657	+	Sama_3543	0.71	+0.2
4,175,657	+	Sama_3543	0.71	+1.4
4,175,657	+	Sama_3543	0.71	-0.6
4,175,672	-	Sama_3543	0.72	-0.1
4,175,677	+	Sama_3543	0.73	+1.4
4,175,677	+	Sama_3543	0.73	+0.9
4,175,678	-	Sama_3543	0.73	+1.1
4,175,678	-	Sama_3543	0.73	+0.5
4,175,678	-	Sama_3543	0.73	+0.4
4,175,678	-	Sama_3543	0.73	+1.7
4,175,678	-	Sama_3543	0.73	+0.1
4,175,678	-	Sama_3543	0.73	+1.4
4,175,678	-	Sama_3543	0.73	+1.0
4,175,688	+	Sama_3543	0.74	-0.6
4,175,695	-	Sama_3543	0.74	+1.0
4,175,700	+	Sama_3543	0.74	+0.1
4,175,700	+	Sama_3543	0.74	-0.5
4,175,700	+	Sama_3543	0.74	-1.6
4,175,701	-	Sama_3543	0.75	+1.2
4,175,705	+	Sama_3543	0.75	+1.7
4,175,705	+	Sama_3543	0.75	+1.0
4,175,751	-	Sama_3543	0.78	+1.7
4,175,761	+	Sama_3543	0.79	+0.7
4,175,761	+	Sama_3543	0.79	+0.2
4,175,761	+	Sama_3543	0.79	+1.1
4,175,761	+	Sama_3543	0.79	+1.2
4,175,761	+	Sama_3543	0.79	+0.4
4,175,761	+	Sama_3543	0.79	+1.0
4,175,762	-	Sama_3543	0.79	+0.4
4,175,762	-	Sama_3543	0.79	-0.2
4,175,762	-	Sama_3543	0.79	+2.7
4,175,773	-	Sama_3543	0.80	+0.7
4,175,773	-	Sama_3543	0.80	+0.6
4,175,773	-	Sama_3543	0.80	+1.7
4,175,774	+	Sama_3543	0.80	+0.9
4,175,774	+	Sama_3543	0.80	-0.6
4,175,774	+	Sama_3543	0.80	+1.0
4,175,774	+	Sama_3543	0.80	+1.7
4,175,774	+	Sama_3543	0.80	+0.7
4,175,774	+	Sama_3543	0.80	-1.0
4,175,774	+	Sama_3543	0.80	+2.2
4,175,774	+	Sama_3543	0.80	-0.3
4,175,774	+	Sama_3543	0.80	+0.6
4,175,774	+	Sama_3543	0.80	+0.9
4,175,775	-	Sama_3543	0.80	+1.0
4,175,775	-	Sama_3543	0.80	+1.8
4,175,775	-	Sama_3543	0.80	+1.2
4,175,775	-	Sama_3543	0.80	+0.4
4,175,775	-	Sama_3543	0.80	-0.4
4,175,775	-	Sama_3543	0.80	-0.7
4,175,837	+	Sama_3543	0.85	+1.8
4,175,837	+	Sama_3543	0.85	+0.3
4,175,837	+	Sama_3543	0.85	-0.6
4,175,837	+	Sama_3543	0.85	+1.5
4,175,838	-	Sama_3543	0.85	+0.3
4,175,838	-	Sama_3543	0.85	+0.7
4,175,838	-	Sama_3543	0.85	+0.8
4,175,850	-	Sama_3543	0.86	-0.2
4,175,882	+	Sama_3543	0.88	+1.0
4,175,882	+	Sama_3543	0.88	+0.6
4,175,883	-	Sama_3543	0.88	-0.3
4,175,883	-	Sama_3543	0.88	+1.1
4,175,917	+			-0.9
4,175,918	-			+0.7
4,175,926	-			-0.6
4,175,953	+			+1.4
4,175,954	-			+1.1
4,175,954	-			+0.5
4,175,954	-			+0.8
4,175,954	-			+1.0
4,175,954	-			+0.6
4,175,998	-			+1.8
4,175,998	-			+1.0
4,176,026	+			+0.9
4,176,026	+			-0.3
4,176,026	+			+0.0
4,176,026	+			+0.1
4,176,026	+			+0.4
4,176,026	+			+1.0
4,176,026	+			-0.8
4,176,026	+			+1.1
4,176,026	+			+0.8
4,176,027	-			+0.1
4,176,027	-			+0.1
4,176,027	-			+1.0
4,176,027	-			+0.6
4,176,027	-			+1.1
4,176,027	-			+2.0
4,176,027	-			+0.3
4,176,027	-			-0.3
4,176,027	-			+1.3
4,176,027	-			+0.7
4,176,032	+			+1.7
4,176,032	+			+0.3
4,176,032	+			+0.8
4,176,032	+			+1.0
4,176,032	+			+2.0
4,176,032	+			+0.9
4,176,032	+			+0.8
4,176,033	-			+1.1
4,176,047	+			+0.7
4,176,047	+			+0.9
4,176,047	+			+0.9
4,176,047	+			-0.3
4,176,047	+			-0.1
4,176,047	+			+0.3
4,176,047	+			+2.3
4,176,047	+			+1.4
4,176,047	+			+1.2
4,176,047	+			-0.6
4,176,047	+			+0.8
4,176,047	+			+0.6
4,176,047	+			+0.3
4,176,047	+			+0.4
4,176,047	+			+2.5
4,176,048	-			+1.0
4,176,048	-			-0.1
4,176,048	-			+0.3
4,176,048	-			+1.7
4,176,048	-			-0.5
4,176,048	-			+1.8
4,176,048	-			+2.0
4,176,048	-			-0.7
4,176,048	-			+1.3
4,176,048	-			+1.7
4,176,085	+			-0.5
4,176,085	+			+0.4
4,176,085	+			+2.0
4,176,085	+			+0.3
4,176,086	-			+1.4
4,176,103	+			-0.9
4,176,103	+			+0.5
4,176,103	+			+0.7
4,176,104	-			+0.1
4,176,104	-			-0.4
4,176,104	-			-0.1
4,176,104	-			-0.8
4,176,104	-			-0.6
4,176,104	-			+0.3
4,176,104	-			+1.0
4,176,104	-			-0.7
4,176,104	-			+0.7
4,176,297	+	Sama_3544	0.22	+0.4
4,176,297	+	Sama_3544	0.22	-0.6
4,176,297	+	Sama_3544	0.22	-0.3
4,176,297	+	Sama_3544	0.22	+0.6
4,176,297	+	Sama_3544	0.22	-1.0
4,176,297	+	Sama_3544	0.22	+0.1
4,176,297	+	Sama_3544	0.22	-1.1
4,176,298	-	Sama_3544	0.22	+1.0
4,176,298	-	Sama_3544	0.22	+0.4
4,176,298	-	Sama_3544	0.22	+0.0
4,176,298	-	Sama_3544	0.22	+0.0
4,176,341	+	Sama_3544	0.29	-0.7
4,176,341	+	Sama_3544	0.29	+0.9
4,176,342	-	Sama_3544	0.29	-0.4
4,176,359	+	Sama_3544	0.32	-0.8
4,176,359	+	Sama_3544	0.32	+0.1
4,176,359	+	Sama_3544	0.32	+0.7
4,176,359	+	Sama_3544	0.32	+0.4
4,176,360	-	Sama_3544	0.32	-0.1
4,176,360	-	Sama_3544	0.32	-1.2
4,176,390	+	Sama_3544	0.37	+1.2
4,176,390	+	Sama_3544	0.37	-0.6
4,176,422	+	Sama_3544	0.42	-0.1
4,176,422	+	Sama_3544	0.42	-0.6
4,176,422	+	Sama_3544	0.42	-0.4
4,176,431	+	Sama_3544	0.44	+1.0
4,176,431	+	Sama_3544	0.44	+0.0
4,176,431	+	Sama_3544	0.44	-0.2
4,176,431	+	Sama_3544	0.44	+0.4
4,176,431	+	Sama_3544	0.44	-1.6
4,176,432	-	Sama_3544	0.44	-1.7
4,176,432	-	Sama_3544	0.44	-0.2
4,176,432	-	Sama_3544	0.44	+1.3
4,176,432	-	Sama_3544	0.44	-0.1
4,176,432	-	Sama_3544	0.44	-0.3
4,176,570	-	Sama_3544	0.67	+0.2
4,176,607	-	Sama_3544	0.73	+0.0
4,176,641	+	Sama_3544	0.79	-0.3
4,176,642	-	Sama_3544	0.79	+0.0
4,176,652	+	Sama_3544	0.80	-0.3
4,176,652	+	Sama_3544	0.80	-0.2
4,176,653	-	Sama_3544	0.81	-0.3
4,176,714	+			+0.6
4,176,714	+			+0.5
4,176,715	-			-0.9
4,176,737	+			-0.9
4,176,737	+			-1.2
4,176,738	-			+0.0
4,176,808	+			-0.1
4,176,868	+			+0.2
4,176,868	+			-0.6
4,176,868	+			+1.4
4,176,868	+			+0.3
4,176,869	-			-1.6
4,176,869	-			+0.0
4,176,869	-			-0.4
4,176,869	-			-0.5
4,176,869	-			-1.7
4,176,883	-			+0.0
4,176,883	-			-1.0
4,176,952	+	Sama_3545	0.10	-0.6
4,176,953	-	Sama_3545	0.10	-0.4

Or see this region's nucleotide sequence