Strain Fitness in Shewanella oneidensis MR-1 around SO3899

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
4,045,988	-		SO3898	0.30	+0.3
4,046,115	-		SO3898	0.41	-0.1
4,046,115	-		SO3898	0.41	+0.2
4,046,254	-		SO3898	0.53	-0.1
4,046,264	-		SO3898	0.54	+0.4
4,046,412	-		SO3898	0.66	+0.8
4,046,523	-		SO3898	0.76	+1.4
4,046,567	-		SO3898	0.80	+0.9
4,046,867	-				-0.1
4,046,882	-				-0.1
4,048,832	-				+0.8
4,048,904	+		SO3900	0.17	-0.9
4,049,020	-		SO3900	0.38	-0.3
4,049,130	-		SO3900	0.57	-0.7
4,049,140	-		SO3900	0.58	-0.6
4,049,140	-		SO3900	0.58	+0.8
4,049,220	+		SO3900	0.72	+0.2
4,049,257	-		SO3900	0.79	+0.8
4,049,366	+				+0.3
4,049,465	-				-3.0
4,049,470	-				-2.4
4,049,470	-				-2.8
4,049,470	-				-3.6
4,049,485	+				-2.0
4,049,493	-	icc	SO3901	0.10	-3.2
4,049,493	-	icc	SO3901	0.10	+1.7
4,049,565	+	icc	SO3901	0.19	-1.9
4,049,565	+	icc	SO3901	0.19	-2.6
4,049,573	-	icc	SO3901	0.20	-1.3
4,049,661	-	icc	SO3901	0.30	-2.3
4,049,661	-	icc	SO3901	0.30	-2.6
4,049,698	+	icc	SO3901	0.35	-2.2
4,049,712	+	icc	SO3901	0.37	-3.3
4,049,712	+	icc	SO3901	0.37	-4.2
4,049,720	-	icc	SO3901	0.38	-3.1
4,049,720	-	icc	SO3901	0.38	-2.5
4,049,720	-	icc	SO3901	0.38	-0.6