Strain Fitness in Shewanella oneidensis MR-1 around SO2835

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
2,952,372	+	nrdD	SO2834	0.68	+0.3
2,952,418	-	nrdD	SO2834	0.70	-0.3
2,952,451	+	nrdD	SO2834	0.72	-0.1
2,952,459	-	nrdD	SO2834	0.72	-0.2
2,952,482	+	nrdD	SO2834	0.73	-0.0
2,952,482	+	nrdD	SO2834	0.73	+0.6
2,952,490	-	nrdD	SO2834	0.74	-0.3
2,952,526	+	nrdD	SO2834	0.75	+0.0
2,952,529	-	nrdD	SO2834	0.76	-0.7
2,952,636	-	nrdD	SO2834	0.81	+0.7
2,952,636	-	nrdD	SO2834	0.81	+0.0
2,952,636	-	nrdD	SO2834	0.81	-0.5
2,952,756	+	nrdD	SO2834	0.86	-0.6
2,952,800	+	nrdD	SO2834	0.88	-0.7
2,952,805	+	nrdD	SO2834	0.89	-1.0
2,952,947	+				+0.0
2,953,234	-				+0.9
2,953,357	-				+0.0
2,953,357	-				-0.7
2,953,415	+				+0.6
2,953,698	-		SO2835	0.48	-0.6
2,953,926	-		SO2835	0.79	-1.2
2,953,940	+		SO2835	0.81	-0.9
2,953,957	-		SO2835	0.83	-0.9
2,953,978	+		SO2835	0.86	-0.1
2,954,014	+				+0.0
2,954,047	+				+0.4
2,954,047	+				+0.0
2,954,055	-				+0.1
2,954,111	-				+0.4
2,954,128	-				-1.8
2,954,277	+		SO2836	0.14	+0.0
2,954,372	-		SO2836	0.24	-0.1
2,954,389	-		SO2836	0.26	-0.3
2,954,510	+		SO2836	0.38	+0.0
2,954,555	-		SO2836	0.43	+0.1
2,954,603	+		SO2836	0.48	+0.2
2,954,603	+		SO2836	0.48	-1.7
2,954,610	+		SO2836	0.49	-0.9
2,954,611	-		SO2836	0.49	-0.9
2,954,622	+		SO2836	0.50	+1.8
2,954,698	-		SO2836	0.58	+1.5
2,954,846	-		SO2836	0.74	+0.1
2,954,914	-		SO2836	0.81	+1.6
2,954,940	-		SO2836	0.84	+0.4
2,955,034	+				+0.4
2,955,052	+				+1.2
2,955,060	-				-0.2
2,955,060	-				-0.6