Strain Fitness in Shewanella oneidensis MR-1 around SO2719

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
2,836,157	-		SO2718	0.22	+1.0
2,836,157	-		SO2718	0.22	-0.1
2,836,169	-		SO2718	0.23	+0.5
2,836,224	-		SO2718	0.28	-0.6
2,836,226	+		SO2718	0.28	-1.0
2,836,234	-		SO2718	0.28	-0.5
2,836,302	+		SO2718	0.34	+0.9
2,836,323	-		SO2718	0.36	+0.1
2,836,323	-		SO2718	0.36	+0.5
2,836,394	+		SO2718	0.42	-0.1
2,836,409	+		SO2718	0.44	-0.3
2,836,409	+		SO2718	0.44	+0.2
2,836,409	+		SO2718	0.44	+0.4
2,836,409	-		SO2718	0.44	+0.3
2,836,420	+		SO2718	0.45	+0.5
2,836,420	+		SO2718	0.45	+0.0
2,836,428	-		SO2718	0.45	-0.4
2,836,428	-		SO2718	0.45	-0.3
2,836,430	+		SO2718	0.45	-0.1
2,836,430	+		SO2718	0.45	+0.0
2,836,430	+		SO2718	0.45	+0.4
2,836,438	-		SO2718	0.46	+0.3
2,836,557	+		SO2718	0.56	+0.1
2,836,573	+		SO2718	0.58	-0.0
2,836,575	-		SO2718	0.58	+0.3
2,836,580	-		SO2718	0.58	-0.4
2,836,581	-		SO2718	0.58	-0.2
2,836,601	-		SO2718	0.60	-0.6
2,836,667	+		SO2718	0.66	+0.3
2,836,711	-		SO2718	0.70	-0.4
2,836,722	+		SO2718	0.71	+0.1
2,836,722	+		SO2718	0.71	-0.1
2,836,722	+		SO2718	0.71	-0.6
2,836,722	+		SO2718	0.71	-0.6
2,836,722	+		SO2718	0.71	-0.2
2,836,727	+		SO2718	0.71	+0.9
2,836,730	-		SO2718	0.71	+0.4
2,836,730	-		SO2718	0.71	-0.3
2,836,730	-		SO2718	0.71	-0.3
2,836,735	-		SO2718	0.72	-0.7
2,836,786	+		SO2718	0.76	-0.2
2,836,787	+		SO2718	0.76	+0.1
2,836,793	+		SO2718	0.77	+0.5
2,836,793	+		SO2718	0.77	-0.4
2,836,794	-		SO2718	0.77	+0.1
2,836,794	-		SO2718	0.77	-0.4
2,836,833	+		SO2718	0.80	+0.1
2,836,833	+		SO2718	0.80	-0.2
2,836,888	+		SO2718	0.85	-0.5
2,836,906	+		SO2718	0.87	-0.0
2,836,934	+		SO2718	0.89	-0.6
2,837,090	+				+0.3
2,837,090	+				-0.8
2,837,098	-				-0.9
2,837,103	+				-0.2
2,837,105	-				-0.2
2,837,105	-				+0.0
2,837,108	+				+0.5
2,837,109	+				-0.1
2,837,109	+				+1.3
2,837,110	-				+0.3
2,837,110	-				-0.6
2,837,201	-	deoD-3	SO2719	0.13	-0.8
2,837,210	-	deoD-3	SO2719	0.14	-0.5
2,837,248	-	deoD-3	SO2719	0.19	+0.1
2,837,280	-	deoD-3	SO2719	0.24	-0.0
2,837,283	+	deoD-3	SO2719	0.24	-0.3
2,837,293	-	deoD-3	SO2719	0.26	+0.2
2,837,308	+	deoD-3	SO2719	0.28	-0.6
2,837,407	-	deoD-3	SO2719	0.42	-0.4
2,837,447	-	deoD-3	SO2719	0.48	-0.7
2,837,539	+	deoD-3	SO2719	0.61	+0.6
2,837,547	-	deoD-3	SO2719	0.62	-0.9
2,837,550	-	deoD-3	SO2719	0.62	-0.4
2,837,675	+	deoD-3	SO2719	0.80	+0.5
2,837,678	-	deoD-3	SO2719	0.80	+0.2
2,837,701	+	deoD-3	SO2719	0.84	-0.3
2,837,709	-	deoD-3	SO2719	0.85	-1.8
2,837,817	+				+0.0
2,838,446	+		SO2720	0.20	-0.1
2,838,454	-		SO2720	0.22	-0.5
2,838,616	-		SO2720	0.63	+0.0